Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I19
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    28   2.6  
U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    27   6.0  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    27   6.0  
AC199170-5|ABO33263.1|   95|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 92  VIVHRKNTR-KIVTLHFTGFLPIIEATIV 175
           +I H +N+R K  TLHF  +LP++   I+
Sbjct: 249 LIEHEENSRDKPFTLHFISYLPMLSVIII 277


>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 76  CSMNGCHSTSEKHKKDSNITFHGFPSYHRSDNCSENTF 189
           C      STSE H+  ++ T H   S+H  +  + + +
Sbjct: 133 CHFRRPKSTSEMHQSCTSATIHSLESHHNEERRASHVY 170


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion
           transporter ABTS-3 protein.
          Length = 959

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 76  CSMNGCHSTSEKHKKDSNITFHGFPSYHRSDNCSENTF 189
           C      STSE H+  ++ T H   S+H  +  + + +
Sbjct: 133 CHFRRPKSTSEMHQSCTSATIHSLESHHNEERRASHVY 170


>AC199170-5|ABO33263.1|   95|Caenorhabditis elegans Hypothetical
           protein T08D2.4 protein.
          Length = 95

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 64  KMTVCSMNGCHSTSEKHKKDSNITF 138
           K+ +C  + C    EKH + SN+TF
Sbjct: 41  KVLICGHSFCIICIEKHLRSSNLTF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,349,162
Number of Sequences: 27780
Number of extensions: 98338
Number of successful extensions: 352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)