Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I16
         (822 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC024162-1|AAH24162.1|  612|Homo sapiens integrin alpha FG-GAP r...   104   3e-22
BC006321-1|AAH06321.2|  612|Homo sapiens integrin alpha FG-GAP r...   104   3e-22
AK027596-1|BAB55220.1|  612|Homo sapiens protein ( Homo sapiens ...   104   3e-22
AF503339-1|AAN31655.1|  612|Homo sapiens T-cell immunomodulatory...   104   3e-22
AF212247-1|AAG41782.1|  609|Homo sapiens CDA08 protein.               104   4e-22

>BC024162-1|AAH24162.1|  612|Homo sapiens integrin alpha FG-GAP
           repeat containing 1 protein.
          Length = 612

 Score =  104 bits (250), Expect = 3e-22
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
 Frame = +3

Query: 288 GKYSEGIIAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPS-EFACNFSDIVITS 464
           G  + G +AAFGD NSD+ TD FV++  + + VFLA    P+ +P  + +      +ITS
Sbjct: 43  GAEAWGTLAAFGDLNSDKQTDLFVLRERNDLIVFLADQNAPYFKPKVKVSFKNHSALITS 102

Query: 465 IVPGDYDGDAYMDILLTTQNVNNTSKFHNVSILWGGMPTLNCSDALQTKAITFEQPLVMD 644
           +VPGDYDGD+ MD+LLT    N         I WG   TL+ ++         ++PL+MD
Sbjct: 103 VVPGDYDGDSQMDVLLTYLPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMD 162

Query: 645 YNRDMILDLFGINVEGKR 698
           +N D+I D+FGI  E  +
Sbjct: 163 FNGDLIPDIFGITNESNQ 180


>BC006321-1|AAH06321.2|  612|Homo sapiens integrin alpha FG-GAP
           repeat containing 1 protein.
          Length = 612

 Score =  104 bits (250), Expect = 3e-22
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
 Frame = +3

Query: 288 GKYSEGIIAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPS-EFACNFSDIVITS 464
           G  + G +AAFGD NSD+ TD FV++  + + VFLA    P+ +P  + +      +ITS
Sbjct: 43  GAEAWGTLAAFGDLNSDKQTDLFVLRERNDLIVFLADQNAPYFKPKVKVSFKNHSALITS 102

Query: 465 IVPGDYDGDAYMDILLTTQNVNNTSKFHNVSILWGGMPTLNCSDALQTKAITFEQPLVMD 644
           +VPGDYDGD+ MD+LLT    N         I WG   TL+ ++         ++PL+MD
Sbjct: 103 VVPGDYDGDSQMDVLLTYLPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMD 162

Query: 645 YNRDMILDLFGINVEGKR 698
           +N D+I D+FGI  E  +
Sbjct: 163 FNGDLIPDIFGITNESNQ 180


>AK027596-1|BAB55220.1|  612|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14690 fis, clone NT2RP2005270. ).
          Length = 612

 Score =  104 bits (250), Expect = 3e-22
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
 Frame = +3

Query: 288 GKYSEGIIAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPS-EFACNFSDIVITS 464
           G  + G +AAFGD NSD+ TD FV++  + + VFLA    P+ +P  + +      +ITS
Sbjct: 43  GAEAWGTLAAFGDLNSDKQTDLFVLRERNDLIVFLADQNAPYFKPKVKVSFKNHSALITS 102

Query: 465 IVPGDYDGDAYMDILLTTQNVNNTSKFHNVSILWGGMPTLNCSDALQTKAITFEQPLVMD 644
           +VPGDYDGD+ MD+LLT    N         I WG   TL+ ++         ++PL+MD
Sbjct: 103 VVPGDYDGDSQMDVLLTYLPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMD 162

Query: 645 YNRDMILDLFGINVEGKR 698
           +N D+I D+FGI  E  +
Sbjct: 163 FNGDLIPDIFGITNESNQ 180


>AF503339-1|AAN31655.1|  612|Homo sapiens T-cell immunomodulatory
           protein protein.
          Length = 612

 Score =  104 bits (250), Expect = 3e-22
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
 Frame = +3

Query: 288 GKYSEGIIAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPS-EFACNFSDIVITS 464
           G  + G +AAFGD NSD+ TD FV++  + + VFLA    P+ +P  + +      +ITS
Sbjct: 43  GAEAWGTLAAFGDLNSDKQTDLFVLRERNDLIVFLADQNAPYFKPKVKVSFKNHSALITS 102

Query: 465 IVPGDYDGDAYMDILLTTQNVNNTSKFHNVSILWGGMPTLNCSDALQTKAITFEQPLVMD 644
           +VPGDYDGD+ MD+LLT    N         I WG   TL+ ++         ++PL+MD
Sbjct: 103 VVPGDYDGDSQMDVLLTYLPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMD 162

Query: 645 YNRDMILDLFGINVEGKR 698
           +N D+I D+FGI  E  +
Sbjct: 163 FNGDLIPDIFGITNESNQ 180


>AF212247-1|AAG41782.1|  609|Homo sapiens CDA08 protein.
          Length = 609

 Score =  104 bits (249), Expect = 4e-22
 Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
 Frame = +3

Query: 303 GIIAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPS-EFACNFSDIVITSIVPGD 479
           G +AAFGD NSD+ TD FV++  + + VFLA    P+ +P  + +      +ITS+VPGD
Sbjct: 45  GTLAAFGDLNSDKQTDLFVLRERNDLIVFLADQNAPYFKPKVKVSFKNHSALITSVVPGD 104

Query: 480 YDGDAYMDILLTTQNVNNTSKFHNVSILWGGMPTLNCSDALQTKAITFEQPLVMDYNRDM 659
           YDGD+ MD+LLT    N         I WG   TL+ ++         ++PL+MD+N D+
Sbjct: 105 YDGDSQMDVLLTYLPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMDFNGDL 164

Query: 660 ILDLFGINVEGKR 698
           I D+FGI  E  +
Sbjct: 165 IPDIFGITNESNQ 177


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,576,301
Number of Sequences: 237096
Number of extensions: 2294872
Number of successful extensions: 3734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3729
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)