Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_I13
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 44 3e-05
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 38 0.001
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 34 0.029
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 33 0.039
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 31 0.27
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.84
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 29 1.1
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 29 1.1
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 29 1.1
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 28 1.5
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 27 2.6
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 27 2.6
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 27 2.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.4
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 27 4.5
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 26 7.8
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 7.8
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 26 7.8
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 44.0 bits (99), Expect = 3e-05
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 2/182 (1%)
Frame = +2
Query: 311 LEEDAYVEGIAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPY 490
LEED Y+EG++ IIQ+ +FPDL KL A+ LE+ E + E +R Y
Sbjct: 30 LEEDDYIEGLSYIIQQQYFPDLPKLKAE-VVLESEEVGSFDAQNE-------SRDEKLKY 81
Query: 491 NTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDKTADITDNHSLDSFLAKHTSEDNESY 670
+ P R + A + TK + S+ S+ K TSEDN S+
Sbjct: 82 LIAKNSEDPLRKRLPSLAIH---------EITKAQLDGENKPISVASYQNKFTSEDNASF 132
Query: 671 DRVISLEQKKRA--NKIASQLQAEITSATLADEALALPSIEQQADQTERPHELDTWRYXA 844
++ E + RA +K + ++ S ++ + + E+ + TW Y
Sbjct: 133 GELMEDESRLRAEQHKRRFGVHSQQPSNSIQTIGYSNSDAIKSIAWKEKDKSIKTWNYQP 192
Query: 845 RN 850
+N
Sbjct: 193 KN 194
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +2
Query: 545 TNNEDAPRQTKNATKDKTADITDNHSLDSFLAKHTSEDNESYDRVISLEQKKRANKIASQ 724
T N D +QTKN T+ + + LDS ++N S ++ + KK+A K A +
Sbjct: 2 TTNPDIVKQTKNEIHQVTSRVQEK--LDSKSTNAVEQNNNSSQASVTKDNKKKAAKRAKK 59
Query: 725 LQAEITSATLADEALALPSIEQQADQTERPHE 820
A+ + A A + P E Q Q E+ +
Sbjct: 60 KAAKKKKQSAAASASSTPVEEAQHAQEEQQEQ 91
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 33.9 bits (74), Expect = 0.029
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 4/154 (2%)
Frame = +2
Query: 311 LEEDAYVEG-IAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEP 487
LEE+A + + K+ + DLE LN N +EA +++ ++E TQ+ S ++
Sbjct: 411 LEENALLSHKVLKLTEE--IQDLETLNQLNTEIEARQSEKLNEVQEETQRLSQLLISSQ- 467
Query: 488 YNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDKTADITDN-HSLDSFLAKHTSEDNE 664
PA + ++ + C + E NA +K + D +S L+K E++
Sbjct: 468 ---PALTEVKHL-KLCLSDSQEE---LLQLNAKLEKANIVIDELNSAKLKLSKQVEEESS 520
Query: 665 SYDRVISLEQ--KKRANKIASQLQAEITSATLAD 760
D + + Q K++ +++ +EITS TL +
Sbjct: 521 MKDDLTEMNQRLKEQIESYENEVNSEITSRTLKE 554
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 290
Score = 33.5 bits (73), Expect = 0.039
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 642 LARKESKLW-LSVISAVLSLVAFFVCLGASSLLVAGVHGRSMFGVSKVAGVLYGSVGGLF 466
L++K W V+S+V S+V +CLG + L +FG S VAG +Y G F
Sbjct: 71 LSKKTRLNWDAHVVSSVQSIV--LICLGYTCLKEVNAFPDKLFGYSVVAGDIYALTAGYF 128
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 30.7 bits (66), Expect = 0.27
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Frame = +2
Query: 377 EKLNAQNEYLEATENKDYQRLRELT-----QKYSGNRPPTEPYNTPA-TFDTPNIDRPCT 538
++L + NE L + +++ ++L+EL Q R E ++ A D P PCT
Sbjct: 346 KELASSNELLASVRDENTKKLKELQDIIEEQSKHMARLHREGFSEAAENNDKPKETMPCT 405
Query: 539 PATNNEDAPRQTKNATKDKTADITDNHSLDSFLAKHTSEDNESYDRVISLEQKKRANKIA 718
++ D T N +KDK + S+ +L++ + +++Q + K A
Sbjct: 406 YDSSLADDHSDTSNLSKDKANTLCAQCSV--YLSEKYQQQQSLLQLESNIQQLENEKKAA 463
Query: 719 SQLQAEITS 745
++ ++ S
Sbjct: 464 KLIEKDLLS 472
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.1 bits (62), Expect = 0.84
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 368 PDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYNT 496
P LEK N +N+ E EN+ + E T++ N P EP NT
Sbjct: 2192 PALEKYNLENQKKEILENESKE---EETRQPEVNIQPEEPINT 2231
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 496 GVIWFCRWSVPAILLS*FSKSLIVFVFC 413
G IWFC WS+ + S ++KS+I+F C
Sbjct: 118 GYIWFCIWSLIS-GFSYYAKSVIMFDVC 144
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 332 EGIAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLREL 448
E I K+I++ PDLE + +EYL E K ++REL
Sbjct: 355 EHITKLIEQQIKPDLESMLIISEYL--NEYKPSPKMREL 391
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 419 NKDYQRLRELTQ-KYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDK 595
+K YQR R Q KY GN P E T + TP +PAT R T N ++D
Sbjct: 105 HKVYQRGRGAKQSKYLGNGKPIEASQTEESSSTPP-----SPATKKSSKQRLTMN-SRDA 158
Query: 596 TAD 604
D
Sbjct: 159 ALD 161
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = +2
Query: 512 TPNIDRPCTPATNNEDAPRQTKNATKDKTADITDNHSLDSFLAKHTSED----NESYDR- 676
TP+ D TN P+ ++ +DKTA+ + + L K ++ NE+Y +
Sbjct: 220 TPSADSAKPETTNPPPQPQASEPMEEDKTAEELEEAATKEALKKKADQEKQIGNENYKKR 279
Query: 677 --VISLEQKKRA 706
+++EQ K+A
Sbjct: 280 NFPVAIEQYKKA 291
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 539 PATNNEDAPRQTKNATKDKTADITDNHSLDSFLAKHTSEDNESYDRV 679
P+ N E+ P++TKN + + HS+ S S + + DR+
Sbjct: 2 PSLNQEETPKKTKNPYRKGHSRRQSRHSIPSDELNSNSSKSLNNDRI 48
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 2.6
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Frame = +2
Query: 404 LEATENKDYQRLRELT-QKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKN 580
LE N RLR+ QK+ +PP+ +T + D T N D P+ +N
Sbjct: 95 LEVEFNGGDWRLRKYPGQKHINGKPPSNSNSTEDASKPTSSDTASVKETENSD-PKSAEN 153
Query: 581 ATKDKTADITDNHSLDSFLAKHTSEDNESYD 673
+ T HS + +T E+ E D
Sbjct: 154 EVLEGE---TTQHSNNKEAHPNTEENKEQED 181
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +2
Query: 398 EYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTK 577
EY+E K Q+ E K + +P P N P F+T I R N AP +T+
Sbjct: 62 EYIE----KQRQKKLEKMAKKAARKPIAPPSNAPPEFNTDFIKREMLSIPNY--APFETE 115
Query: 578 NATKDKT 598
+ D T
Sbjct: 116 KSALDIT 122
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 3.4
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Frame = +2
Query: 569 QTKNATKDKTADITDNHSLDSFLAKHTSEDNESYDRVISLEQKKRANKIASQLQAEI--- 739
Q KN + + + ++ SL +KHTS +++ + ++EQ + A+K+A ++ +
Sbjct: 904 QQKNTSYSEREALLES-SLSDLQSKHTSLESQYNYSLRNIEQLQAASKLAEEMVERVKTE 962
Query: 740 -------TSATLADEALALPSIEQQ 793
TS +L L + S+EQ+
Sbjct: 963 YDEYRLQTSESLEKNHLKITSLEQR 987
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 594 LSLVAFFVCLGASSLLVAGVHGRSMFGVS 508
LS+V FF CL A+ L H FG+S
Sbjct: 28 LSVVLFFNCLAATLYLHGYKHSSVFFGIS 56
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 338 IAKIIQRDFFPDLEKLNAQNEY--LEATENKDYQRLRELTQKYSGNRPPTEPYNTPAT 505
+A+ +D FP +EKL ++E L ++D ++ E+ G+ PP P TPA+
Sbjct: 244 LARETFKDEFPMIEKLLREDEEGNLWFHASEDAKKFAEVY----GHSPPASPSRTPAS 297
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 7.8
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 569 QTKNATKDKTADITDNH----SLDSFLAKHTSEDNESYDRVISLEQKKRANKIASQLQAE 736
Q + +D I H SLD KH ++ S SL QK + + S + +E
Sbjct: 1046 QYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSE 1105
Query: 737 ITSATLADEALALP 778
T+++ A +AL P
Sbjct: 1106 -TASSYAKKALKKP 1118
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/85 (21%), Positives = 35/85 (41%)
Frame = +2
Query: 395 NEYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQT 574
+E + + +D L E Q +G + Y P + + +P +N T
Sbjct: 251 SERFPSVDFEDPSLLMENQQNITGTGSFAD-YLQPPSSGSLGAFTNASPGESNTGIDFDT 309
Query: 575 KNATKDKTADITDNHSLDSFLAKHT 649
N + + D+ NHS SF+ +++
Sbjct: 310 DNTNLNPSVDLLSNHSTPSFIFENS 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,133
Number of Sequences: 5004
Number of extensions: 65026
Number of successful extensions: 236
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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