Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_I12
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0155 - 32031370-32031707,32033066-32033279 34 0.14
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 33 0.32
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 32 0.56
11_06_0722 - 26678873-26680843 31 0.97
05_04_0158 + 18613265-18615304 30 2.2
02_03_0357 + 18075171-18077240 29 3.9
02_04_0531 + 23707978-23709021 29 5.2
09_06_0200 + 21539963-21541271,21541912-21542013,21542095-215422... 28 9.1
02_04_0553 - 23808328-23809530 28 9.1
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023 28 9.1
>03_06_0155 - 32031370-32031707,32033066-32033279
Length = 183
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 636
IEE +QR EEA + +Q + +A K + + + G+ + R K+ E L E+
Sbjct: 98 IEELKQREEEATQAQQQADVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSEALVEQ 157
Query: 637 KKIS 648
+K++
Sbjct: 158 RKLT 161
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +1
Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKK 642
E+ ++ ++ + AMLQ +KD N +Q+K ++ ++E +TK Q +E
Sbjct: 1431 EEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYH 1490
Query: 643 ISLSIRIKPLTIEGLSVDK 699
++ + L +E L K
Sbjct: 1491 ELKDVKEQKLCLERLDSSK 1509
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 633
+I E+R+R + ++ A+L+AMK+ N ++ E N +LE K+QL+E
Sbjct: 41 EIAEERERFQLEQRGNDALLEAMKE-ELVAANNELEAAKEEISRKNNELE--SVKKQLQE 97
Query: 634 EK 639
+
Sbjct: 98 SE 99
>11_06_0722 - 26678873-26680843
Length = 656
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 607 NKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAXELWECIVKL 744
NKTK+ +E+K++ LS+ +K IE L K + +L C++ L
Sbjct: 418 NKTKKGRKEDKRVRLSMDVKKTVIETL---KKNRGLGQLGNCVISL 460
>05_04_0158 + 18613265-18615304
Length = 679
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Frame = +1
Query: 460 EEKRQRLEEAEKKRQAML-----QAMKDASKTGPNFTIQKK----SENFGLSNAQLERNK 612
+EK ++ +E E K Q L +AMK KTG N I+KK +E +A++ ++K
Sbjct: 608 QEKVEKNQEKEMKIQEKLGEIFDKAMKSEEKTGQNPGIEKKIQDTAEKKQEHDARVVQDK 667
Query: 613 TKEQLEEEKKI 645
++ +E KKI
Sbjct: 668 VEKIQDEAKKI 678
>02_03_0357 + 18075171-18077240
Length = 689
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Frame = +1
Query: 553 TIQKKSENFGLSNAQLERNKT-----KEQLEEEKKISLSIRIKP 669
+I++K +NF L+ ++ RN+T QL EE KIS+S + P
Sbjct: 594 SIKEKFKNFNLAFEEIYRNQTTWKVPDPQLREELKISISENVIP 637
>02_04_0531 + 23707978-23709021
Length = 347
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 10 PGSPRTPHSNVAVLPVQEPVP 72
P SPRTPH+ V LPV +P
Sbjct: 37 PDSPRTPHTYVGFLPVFGDLP 57
>09_06_0200 +
21539963-21541271,21541912-21542013,21542095-21542291,
21542396-21542603,21542685-21542922,21543010-21543160,
21543538-21543849
Length = 838
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -2
Query: 679 RWSAA*CGWTGRSSSPLPAAPWSCCAPAGHC 587
RWS+ W P P+ C P G+C
Sbjct: 272 RWSSGSSAWVVLQEWPAGCDPYDFCGPNGYC 302
>02_04_0553 - 23808328-23809530
Length = 400
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 10 PGSPRTPHSNVAVLPVQEPVP 72
P SPRTPH+ ++LPV +P
Sbjct: 73 PDSPRTPHTYGSLLPVYGDLP 93
>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
Length = 432
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 10 PGSPRTPHSNVAVLPVQEPVP 72
P SPRTPH+ ++LPV +P
Sbjct: 73 PDSPRTPHTYGSLLPVYGDLP 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,599
Number of Sequences: 37544
Number of extensions: 234188
Number of successful extensions: 996
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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