Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I07
         (811 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   6.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.8  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    21   8.8  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    21   8.8  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 224 NENVNPVVFEKLTGVDKGIALCGLNSPKDRN 316
           N     +V  K + + +G   CG +SP + N
Sbjct: 18  NPETELLVSTKRSTISQGCKACGYHSPLESN 48


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 184 CKFPKSSHKDTTTERKCESC 243
           CK+  +   D    RKC+ C
Sbjct: 224 CKYGNNCEIDMYMRRKCQEC 243


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 291 VSTALKTGTHSDLP 332
           ++  L+ GTH+DLP
Sbjct: 681 MNLVLQVGTHADLP 694


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 334 HRCDARGQPDHSRRYQTVC 390
           H+ D  G P   RR +T C
Sbjct: 77  HKADISGNPRALRRLRTQC 95


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 334 HRCDARGQPDHSRRYQTVC 390
           H+ D  G P   RR +T C
Sbjct: 77  HKADISGNPRALRRLRTQC 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,997
Number of Sequences: 336
Number of extensions: 3302
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)