Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I06
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   2.9  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   6.7  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   6.7  

>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 34  VYLIWMFLLDKFVFDKAQCTRRMRNA 111
           VYLIW+   D FV  K +  R +RNA
Sbjct: 63  VYLIWLIYDDGFVTGKDRQKRWLRNA 88


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 256 STSNQRVYILQKKKLNARSVGYQSNNFKLXTC*TNNTVYRSVFFFKRTQRFS 101
           STS   V I      NARS+ Y+ ++F L     +NT + S    +  + FS
Sbjct: 583 STSRSSVKITGPSSPNARSMAYEQHSFNLDD--LSNTNFGSNNSLRHAKSFS 632


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 289 SDLLLHCNKMLSTSNQRVYI 230
           SD L+H +KML++S +  YI
Sbjct: 430 SDTLIHLHKMLNSSPEETYI 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,442
Number of Sequences: 5004
Number of extensions: 46644
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)