Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I06
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006776-5|AAF60625.1|  358|Caenorhabditis elegans Serpentine re...    30   1.6  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    29   2.7  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   6.3  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   6.3  

>AC006776-5|AAF60625.1|  358|Caenorhabditis elegans Serpentine
           receptor, class w protein90 protein.
          Length = 358

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 279 CFIATRCYQQVISVFISFKKKNSTLGASATNQIILNSK--RVKQIILFIEAFFFLRE 115
           CF  T  +  V+ ++   K  +ST+  +ATN+ + NSK  R    I+F+   FF+ E
Sbjct: 230 CF--TLPFLNVLLIYGMRKSNSSTVEIAATNKNLRNSKKDRTTIFIIFVATSFFISE 284


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 142 YRSVFFFKRTQRFSYAVCTGPYRIRTYLTGTSI 44
           Y+S  F  +T +FSY V +  Y IRT +  TSI
Sbjct: 116 YQSCIFNYKTHKFSYFVKSYVYLIRTLIITTSI 148


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -1

Query: 387 VGEKRIAWLTAELLKHFNDRK**KVMHLSISFSRTYCFIATRCYQQVISVFISFKKKNST 208
           V E+   +L ++L +H+N+ +  KV  ++ +    YC      Y Q++ V          
Sbjct: 257 VSEEFAKFLISQLREHYNNERIDKVPKMNCNDYMEYCEDQINRYSQLVKVNFDEPSALKD 316

Query: 207 LGASATNQII 178
           + A+ TN +I
Sbjct: 317 VQATVTNCLI 326


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -1

Query: 387 VGEKRIAWLTAELLKHFNDRK**KVMHLSISFSRTYCFIATRCYQQVISVFISFKKKNST 208
           V E+   +L ++L +H+N+ +  KV  ++ +    YC      Y Q++ V          
Sbjct: 294 VSEEFAKFLISQLREHYNNERIDKVPKMNCNDYMEYCEDQINRYSQLVKVNFDEPSALKD 353

Query: 207 LGASATNQII 178
           + A+ TN +I
Sbjct: 354 VQATVTNCLI 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,825
Number of Sequences: 27780
Number of extensions: 253591
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)