Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I02
         (832 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   6.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.1  
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    21   9.1  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   9.1  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   9.1  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 151 VTRCPSLSTTQAHGSSSRWTSVTLVTITSNT 59
           +T C S+ TT ++GS   +   T    T N+
Sbjct: 102 MTSCSSVPTTASYGSDLYFPGATSQPPTDNS 132


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 569 ESWLHIQEHPDW 534
           E  LH+Q +PDW
Sbjct: 535 ERQLHMQLYPDW 546


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 569 ESWLHIQEHPDW 534
           E  LH+Q +PDW
Sbjct: 427 ERQLHMQLYPDW 438


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 278 LYFPSVNFKLRSRRHFF*ENNSASQLFWIRKRIFNQVL 165
           L+F  + ++L S R+ F +    SQ   I KR+   VL
Sbjct: 3   LWFKQIIYELDSIRNIFSDVLEESQTLEILKRLNRVVL 40


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 278 LYFPSVNFKLRSRRHFF*ENNSASQLFWIRKRIFNQVL 165
           L+F  + ++L S R+ F +    SQ   I KR+   VL
Sbjct: 63  LWFKQIIYELDSIRNIFSDVLEESQTLEILKRLNRVVL 100


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 278 LYFPSVNFKLRSRRHFF*ENNSASQLFWIRKRIFNQVL 165
           L+F  + ++L S R+ F +    SQ   I KR+   VL
Sbjct: 63  LWFKQIIYELDSIRNIFSDVLEESQTLEILKRLNRVVL 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,578
Number of Sequences: 336
Number of extensions: 3449
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)