Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I02
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    39   8e-04
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    31   0.26 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   3.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   4.3  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   5.7  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   5.7  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   5.7  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   7.5  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 26/94 (27%), Positives = 46/94 (48%)
 Frame = +3

Query: 12  QISPLEIEKVIRQHPGVLDVIVTSVTDVQREELPCACVVLKDGHRVTEQEIKDLVKDSLS 191
           +ISP EI+ V+ QHP V + +  +V D +  +   A +    G  VT +++ D ++  ++
Sbjct: 414 KISPAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAINPVAGKTVTPKQLHDYLEQKVA 473

Query: 192 DPKQLRGGVIFLKEMPTTPQLKIDRRKVKELVIN 293
             K +     F   +P T   K+ RR V +   N
Sbjct: 474 AFK-IPKKFYFTDRIPKTATGKVQRRLVCDAFFN 506


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 138 GHRVTEQEIKDLVKDS---LSDPKQLRGGVIFLKEMPTTPQLKIDRRKVKELVINTVREA 308
           G  V +Q++K L KD    L++   L+  + +++   T P    DR KVK LV   +   
Sbjct: 474 GEDVLQQKLKQLAKDRGNLLNELDALKSKLAYMEFTYTDPTPNFDRSKVKGLVAQLLTLN 533

Query: 309 *KNY 320
            +NY
Sbjct: 534 EENY 537


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -1

Query: 193  SESESLTKSLISCSVTRCPSLSTTQAHGSSSRWTSVTLVTITSNTPGCWRMTFSISS 23
            S ++S T S+ + S+T   S S   A  + S  +SVT V+ TS+  G    T + ++
Sbjct: 1060 SATDSSTSSVATASITGSLSSSIATASVTGSPTSSVTAVSSTSSVEGTASSTIAAAA 1116


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = -1

Query: 244 VVGISFRKITP----PLNCFGSESESLTKSL-ISCSVTRCPSLSTTQAHGSSSRWTSVTL 80
           + G S  K+T     PL      S + T S  IS S +   + ST+ A  SSS +++VT 
Sbjct: 625 ITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTT 684

Query: 79  VTITSNTP 56
            + T +TP
Sbjct: 685 SSSTVSTP 692


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -1

Query: 193 SESESLTKSLISCSVTRCPSLSTTQAHGSSSRWTSVTLVTITSNTPGCWRMTFSISS 23
           S S S + S  S S +   S S++ +  SSS  +S + V ITS+T      + S SS
Sbjct: 170 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSS 226


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 129  LKDGHRVTEQEIKDLVKDSLSDPKQLRGGVIFLKEMPTTPQLKIDRRK 272
            L++  R ++QE+ DLV +SL   ++  G  +F +         I+ R+
Sbjct: 2397 LQEAERKSQQELADLVTESLQVLQEKVGATVFARAYQEVRNAAIEVRR 2444


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 196 GSESESLTKSLISCSVTRCPSLSTTQAHGSSSRWTSVTLVTITSNT 59
           G E  S T      S+T   S  T   H S+S     T +T+T+N+
Sbjct: 115 GGEGISSTTGSTFQSMTTFTSSQTNSGHASASTSIPSTAITVTANS 160


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 6   NHQISPLEIEKVIRQHPGVLDVIVTSVTDVQREELPCA 119
           NH ISP +I+ ++ +    LD  VT++  VQR  +PCA
Sbjct: 452 NH-ISPEDIKNLLVERLH-LDTRVTTLGHVQRGGIPCA 487


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 378 Q*NTSNPLRL*NKNDKGKICNF 313
           Q N+ NP    N +D G++CNF
Sbjct: 47  QFNSENPSSYYNMDDSGELCNF 68


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 218 NSASQLFWIRKRIFNQVL 165
           N +  LFW+RK+I N VL
Sbjct: 53  NFSKSLFWLRKKIKNSVL 70


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 50  ASRCVGRYSHQRHGRPARG 106
           ASR   + SHQRH R  RG
Sbjct: 130 ASRSSSQSSHQRHSRDGRG 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,877
Number of Sequences: 5004
Number of extensions: 58289
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)