Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I02
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    27   0.21 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 160 SCSVTRCPSLSTTQAHGSSSRWTSVTLVTITSNTPGCWRMTFSIS 26
           +CSVT  P     + H +  R  S TL  I S    CW   F ++
Sbjct: 348 TCSVTNSPHQKKLRFHLAKERKASTTLGIIMSAFIVCWLPFFVLA 392


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 132 KDGHRVTEQEIKDLVKDSLSDP 197
           K  +R+ +  +K+ VKD+  DP
Sbjct: 516 KINYRIFKANVKEAVKDTXCDP 537


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 145 RCPSLSTTQAHGSSSRWTSVTLVTITSNT 59
           R  SLS+T +H       + T+ TIT+ T
Sbjct: 637 RDASLSSTHSHPHEPGAPATTITTITTTT 665


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,997
Number of Sequences: 438
Number of extensions: 3403
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)