Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I01
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196...    30   2.0  
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086...    29   3.5  

>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
            32520145-32520384,32521033-32521149,32521213-32521606,
            32521752-32521998,32522086-32522315,32522768-32522823,
            32522903-32523094,32523274-32523376,32523478-32523544,
            32524312-32525154,32525547-32525670,32525965-32526213,
            32526354-32526443,32526530-32526649,32526664-32526738,
            32527001-32527147,32527255-32527365,32527446-32527667,
            32527777-32527896,32527971-32528270,32528355-32528480,
            32529246-32529360,32529556-32530019,32530119-32530253,
            32530684-32530788,32530876-32531053,32531143-32531864
          Length = 2188

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +1

Query: 301  FSCLLFMFWKCMFVSIYTLLII--LLALRFCVIYIFKFSRPVLIIKQRLNGFKRGIFITM 474
            ++C +F  W C+FV+      I  +L  R+  ++       +L I++    +   +F+  
Sbjct: 1371 YTCSIFGCWNCLFVNTLNSGSIQNILQFRWDCVWHHNHVSILLKIERAEILYSMSLFLLK 1430

Query: 475  FRPHFSSREHGRQRCPVSISGVLSWLIK 558
                  SR+   + C V +S V+ WL+K
Sbjct: 1431 GFLSEQSRDICCRFCSVQMSDVVPWLLK 1458


>04_04_0326 -
           24407201-24407374,24407397-24407460,24408266-24408689,
           24408885-24409057,24409178-24409275,24409723-24409853,
           24410053-24410174,24411091-24411245,24411976-24412081,
           24412328-24412419,24412499-24412620,24413444-24413544,
           24413636-24413849,24414173-24414311,24415228-24415584
          Length = 823

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 499 EHGRQRCPVSISGVLSWLIKVISCFSGDN 585
           +H  +R  +++  +LSW++ V+ CF+G +
Sbjct: 171 DHVSKRALIALFLILSWVVVVVQCFTGSD 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,732,761
Number of Sequences: 37544
Number of extensions: 298741
Number of successful extensions: 697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)