Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H24
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    33   0.033
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   3.7  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   4.9  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   4.9  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   8.6  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   8.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.6  

>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +1

Query: 232 WPGCSVKPFXXXXXXXXXXXXDVDCYAQLPEGEIPSSRT-VIQARNRLRQFPHIFTELFA 408
           WP  S+  F            D+D     PE     ++  +    + L++   + +E+  
Sbjct: 277 WPDVSLYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHHLKKLK-LASEVQV 335

Query: 409 ITTAKVPVLKCYHIPTGYHCDINFTSLSGL 498
           ITTA VP++K     T  H DI+F    GL
Sbjct: 336 ITTANVPIIKFVDPLTKVHVDISFNQPGGL 365


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 397 ELFAITTAKVPVLKCYHIPTGYHCDINFTS 486
           ++  ++ A+VP++K +      HCD+N  +
Sbjct: 136 QIVCVSRARVPIVKIWDPQFDIHCDLNINN 165


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 307 YAQLPEGEIPSSRTVIQARNRLRQFPH 387
           +A+LP G +P S +V +A +     PH
Sbjct: 136 HAELPSGSVPPSASVSRANSTATTTPH 162


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 397 ELFAITTAKVPVLKCYHIPTGYHCDINFTSLSGLLIMNLCTSCLVDSFHTMELLISKK 570
           ++  I+TAKVP++K +       CD N       L   L  S ++       L++  K
Sbjct: 140 KVVCISTAKVPIVKVWDSELQLSCDCNINKTISTLNTRLMRSYVLCDPRVRPLIVMIK 197


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/45 (17%), Positives = 23/45 (51%)
 Frame = +3

Query: 327 RDTIKQDSHTGTQQTETIPTYFH*IICYNHSKSASTEMLPHTNWL 461
           +D ++Q  H   +  + I  +   ++C++ +K  +   + ++ WL
Sbjct: 472 KDVLEQKYHFSAELAQQISDFLSPMLCFDPAKRTNAGYMSNSPWL 516


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -3

Query: 588 NMDILYFLRNQKFHSMKRIHQATCTKIHY**SGQTRKIDITVVTSWYVVTF 436
           ++D +Y        +++   + TC K H   + +T  +D  V +SWY   F
Sbjct: 466 DLDKIYEKGTSPLSNLETWMKTTCPKCHGPATRETDTMDTFVDSSWYYFRF 516


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 343 RTVIQARNRLRQFPHIFTELFAITTAKVPVLKCYHIPTGYHCDINFTSLSGLLIMNLCTS 522
           R     RNR  +   +  E    + +++P      +   Y CD   + L+  L+  L  +
Sbjct: 434 RFAFDTRNRPPEVRELIVECLG-SLSRIPYF-LIDLYVNYDCDPQMSDLAIDLLKVLTRN 491

Query: 523 CLVDS 537
           CLVDS
Sbjct: 492 CLVDS 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,203
Number of Sequences: 5004
Number of extensions: 66866
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)