Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_H24
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1582 + 28007169-28007188,28007278-28007312,28007945-280081... 31 0.73
01_06_1328 + 36347963-36347984,36348609-36348764,36349083-363492... 30 1.7
01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564... 30 2.2
02_01_0725 - 5422477-5422641,5422721-5422792,5422876-5422958,542... 29 2.9
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 29 3.9
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 29 5.2
05_03_0338 + 12652966-12653017,12653813-12653860,12653924-126540... 28 6.8
>08_02_1582 +
28007169-28007188,28007278-28007312,28007945-28008130,
28008783-28008962,28009290-28009474,28009593-28009688,
28009888-28009933,28010054-28010160,28010893-28010994,
28011080-28011614,28012296-28012366,28012747-28012830
Length = 548
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 409 ITTAKVPVLKCYHIPTGYHCDINFTSLSGL 498
+ TAKVPVLK TG CDI+ + G+
Sbjct: 151 VVTAKVPVLKVIDKGTGVECDISVENKDGM 180
>01_06_1328 +
36347963-36347984,36348609-36348764,36349083-36349261,
36349347-36349442,36349525-36349594,36349635-36349705,
36350654-36351286
Length = 408
Score = 30.3 bits (65), Expect = 1.7
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Frame = +1
Query: 238 GCSVKPFXXXXXXXXXXXXDVDCYAQLPEGEIPSSRT---VIQARNRLRQFPHIFTELFA 408
G KPF D+D LP I S + V++ R+ Q + +
Sbjct: 8 GAVFKPFGSFVSNLYSNSGDLDISVHLPNNSIISKKKKQYVLRELMRVLQNRGVAGYVQF 67
Query: 409 ITTAKVPVLKCYHIPTGYHCDINFTSLSGLLIMNL-C-TSCLVDSFHTMELLISK 567
+ A+VPVL+ G CDI+ + G + + C S L F M LLI +
Sbjct: 68 VPFARVPVLQYVSNTFGISCDISVNNYPGRIKSKIFCWISSLDVRFGDMVLLIKE 122
>01_06_1329 +
36354340-36354493,36355781-36355942,36356279-36356457,
36356719-36356918,36356938-36357014,36357110-36357111,
36357594-36357701,36357806-36358024,36358167-36358448
Length = 460
Score = 29.9 bits (64), Expect = 2.2
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Frame = +1
Query: 238 GCSVKPFXXXXXXXXXXXXDVDCYAQLPEG-EIPSSRT----VIQARNRLRQFPHIFTEL 402
G SVKPF D+D +L +P S+ ++ R Q I +
Sbjct: 52 GASVKPFGSFVSQLYAKSGDLDVSVELFNALNLPISKRKKQDTLREVRRALQKRGIARHM 111
Query: 403 FAITTAKVPVLKCYHIPTGYHCDINFTSLSGLLIMNL--CTSCLVDSFHTMELL 558
I A+VPVL+ G CDI+ ++ G + + + L D F M LL
Sbjct: 112 EFIPNARVPVLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLL 165
>02_01_0725 -
5422477-5422641,5422721-5422792,5422876-5422958,
5423113-5423173,5423305-5423381,5423456-5423522,
5423770-5423803,5423894-5423974,5424285-5424436,
5424529-5424615,5425019-5425126,5425906-5426259
Length = 446
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 300 RLLCPAPRGRDTIKQDSHTGTQQTETIPTYFH*IICYNHSKSASTEMLPHTNWLP 464
R+ P PRG+ + D T+ ++I + +C A+ E L NWLP
Sbjct: 97 RVAAPVPRGKGDAEFDEEAWTKDNKSISGFIAYALC------AADEALRDANWLP 145
>09_06_0352 +
22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 388 IFTELFAITTAKVPVLKCYHIPTGYHCDINFTSLSGL 498
IF + + TA+VP++ TG CDI + G+
Sbjct: 787 IFCGVLPVVTARVPIVNVIDRGTGIECDITVENKDGM 823
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +1
Query: 232 WPGCSVKPFXXXXXXXXXXXXDVDCYAQLPEG-EIPSSRTVIQARNRLRQFPHIFTELFA 408
WP + + DVD Q+ E + ++ LR+ F + A
Sbjct: 210 WPNAQLHLYGSCANSFGNSHSDVDVCLQIDTAAEENIAELLLALAETLRKDD--FDNVEA 267
Query: 409 ITTAKVPVLKCYHIPTGYHCDINFTSL 489
IT+A+VP++K +G CDI +L
Sbjct: 268 ITSARVPIVKIADPGSGLSCDICVNNL 294
>05_03_0338 +
12652966-12653017,12653813-12653860,12653924-12654080,
12654104-12654206,12654866-12655111,12655802-12656204,
12656257-12656354,12656460-12657044,12657120-12657566
Length = 712
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Frame = +3
Query: 477 FYEFVRITNNESLYKLLGGFFSYYGTFDFEENIICPYL-----------GFPIRKKSFDL 623
F ++I N+++ + G S + DF I CP + G ++ K +D+
Sbjct: 509 FSVIIQINGNKAVELIDSGSTSTFMDMDFAVKIQCPLMTSKIKRAVVAGGGELKSKGYDI 568
Query: 624 FLTNFSLYQHNVAAEVCKPLRLDTSL 701
L +YQH+ K ++LD ++
Sbjct: 569 ILGANWIYQHSPITLDLKQIKLDITV 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,404,778
Number of Sequences: 37544
Number of extensions: 386675
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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