Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H24
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.75 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.99 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 621  SQSFFFLSEILNMDILYFLRNQKFHSMKRI 532
            SQ  F LSEI N+D+   + N K    K+I
Sbjct: 1353 SQGLFSLSEIDNLDVSLDVSNPKNAGKKKI 1382


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 664 LKYANHCDWTPPYVYK 711
           LKY     W PP +YK
Sbjct: 140 LKYTGDVSWKPPAIYK 155


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 664 LKYANHCDWTPPYVYK 711
           L Y    +W PP +YK
Sbjct: 131 LNYTGRVEWKPPAIYK 146


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 414 HSKSASTEMLPHTNW 458
           HSK+ S ++ P+ NW
Sbjct: 220 HSKTKSPKLRPYPNW 234


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 721 SNGSCIHKEVSSRNGLHTSAA 659
           S  S  H+ +   NGLHT+ A
Sbjct: 393 SPDSARHQRIGGCNGLHTTTA 413



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 664 LKYANHCDWTPPYVYK 711
           L Y     WTPP ++K
Sbjct: 127 LHYTGKVLWTPPAIFK 142


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 526 SNLYKDSLLVIRTNS 482
           +N+YKD+L+V   NS
Sbjct: 309 NNVYKDALIVCTVNS 323


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 526 SNLYKDSLLVIRTNS 482
           +N+YKD+L+V   NS
Sbjct: 362 NNVYKDALIVCTVNS 376


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -3

Query: 483 RKIDITVVTSWYVVTFQYWHFC 418
           R  D   ++ W  V F YW  C
Sbjct: 321 RNADTHEMSEWVKVVFLYWLPC 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,983
Number of Sequences: 438
Number of extensions: 4332
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)