Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H21
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    31   0.19 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    29   1.0  
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc...    29   1.0  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    27   3.1  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   9.5  

>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 396 IGGSWPPAPREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNS 575
           + G +  +P EP  +   S+   S        HND  ++ N I  L P R+    +SS +
Sbjct: 173 VSGDYSDSPLEPSSSSSFSVPPESLNPTLSFQHNDVPQTDNFIPFLTPKRQAYGQSSSRA 232

Query: 576 PILSTEENQ 602
              S   +Q
Sbjct: 233 DRSSVRRSQ 241


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 805 TSVATSTRDPTPISSCKIS--TEAFGIGATARGEPKAGES*TFSRCSALHTSTKIPVS 638
           TS+ TST  P  +SS  +S  T ++    T  G      S T S       S+ IP S
Sbjct: 247 TSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTS 304


>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 197

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = +3

Query: 312 CTMNDENNKMIGNNILINANDQVDLFHLIGGSWPPAPREPECADYGSMSKHSTATMQRNS 491
           C  N +N  M  +N+L NA  QVD F        P P   +   Y     +     +  +
Sbjct: 13  CASN-QNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKELEA 71

Query: 492 HNDRVKSANLIAHLAPDRRRIK 557
            + R+ +AN +  +    RRIK
Sbjct: 72  QDSRLYTANGLLKMLDRNRRIK 93


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 543 RRRIKSTSSNSPILSTEENQQKPKMIQEPKTVE 641
           +R      SN+ +LSTEEN  K K +   K V+
Sbjct: 23  KRMANKGESNTNMLSTEENIVKAKAVSRKKPVD 55


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 771 RFRLVKYLPKLLESAPQPEVNPKLENR 691
           R RLV Y   LL++ P  EV+P L+ R
Sbjct: 647 RSRLVPYQKFLLQTFPLNEVSPSLDPR 673


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 287  KVSHIFVCFHK*LPELCIEQLFSINTIP 204
            + +H+    H  LPE+CI QL  I T+P
Sbjct: 2817 RFAHVARVHH--LPEVCINQLTKIYTLP 2842


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 301 RIPIKKCHTFLFVFINNYQNYA*SNYFQLIQF 206
           +IPI KCH  +  + ++ Q+Y       L++F
Sbjct: 660 KIPIFKCHVAIVQYFHDLQDYLPIVALNLVEF 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,287
Number of Sequences: 5004
Number of extensions: 60555
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)