Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H20
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   255   6e-69
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   255   6e-69
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.9  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   5.1  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   9.0  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  255 bits (624), Expect = 6e-69
 Identities = 119/231 (51%), Positives = 155/231 (67%)
 Frame = +2

Query: 68  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 247
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 248 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 427
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                  
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 428 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 607
                       E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RF
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180

Query: 608 PGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIKLGV 760
           PG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QF   I  G+
Sbjct: 181 PGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGI 231


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  255 bits (624), Expect = 6e-69
 Identities = 119/231 (51%), Positives = 155/231 (67%)
 Frame = +2

Query: 68  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 247
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 248 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 427
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                  
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 428 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 607
                       E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RF
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180

Query: 608 PGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIKLGV 760
           PG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QF   I  G+
Sbjct: 181 PGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGI 231


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 398 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 306
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +2

Query: 8   PMSFCLVSVCGRHFVT*I*NMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQD 187
           P +FC + VC   FV    N     VVK+    + + +K+  R+    D   R  + ++D
Sbjct: 438 PSNFCALEVCALQFV----NGVHKSVVKHLDEKETWSIKYHFRKPRDQDNLLRNYIRLRD 493

Query: 188 KNKYNTPK 211
             K    K
Sbjct: 494 DIKRRESK 501


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 196 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVAS 38
           F  +L     T + +SF F+T  +  +  +  LF  H F+ S ++   N+ Y+V S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,932
Number of Sequences: 5004
Number of extensions: 64974
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)