Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_H19
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 113 1e-25
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 99 2e-21
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 77 1e-14
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 46 3e-05
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 43 3e-04
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991... 31 1.0
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 31 1.0
05_07_0261 + 28764571-28764733,28766039-28766153,28766241-287663... 31 1.0
04_04_0099 + 22795734-22795784,22795866-22796369 28 7.2
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 28 9.6
02_03_0118 - 15451031-15451123,15451744-15451831,15451914-154519... 28 9.6
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 113 bits (273), Expect = 1e-25
Identities = 48/114 (42%), Positives = 75/114 (65%)
Frame = +1
Query: 439 KMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIM 618
KML YN++GGK RGI+ + S+K ++ + + + +AC LGWC+E QAY +VLDDIM
Sbjct: 70 KMLDYNVLGGKCNRGISVIDSFKMLKGTDVLNKEETFLACTLGWCIEWLQAYFLVLDDIM 129
Query: 619 DGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYIKMFEL 780
D S RRG PCW+R P+VG+ A ND +++ + + L+ +F+ Y+ + +L
Sbjct: 130 DNSQTRRGQPCWFRVPQVGL-IAVNDGIILRNHISRILQRHFKGKLYYVDLIDL 182
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 99 bits (238), Expect = 2e-21
Identities = 46/117 (39%), Positives = 69/117 (58%)
Frame = +1
Query: 430 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 609
W+ KM+ YN+ GGK RG++ V SY + + +V + +AC LGWCVE QA +VLD
Sbjct: 99 WVAKMMDYNVPGGKLNRGLSVVDSYMLLRQGTEVDDEDFYLACVLGWCVEWLQASALVLD 158
Query: 610 DIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYIKMFEL 780
DI D + RR CWY+ P VG++ A ND +L+ + +K F+ ++ + EL
Sbjct: 159 DITDNAYTRRDNLCWYKLPTVGMS-AINDGVLLKCHVQAIIKRYFKEKFYFLDLMEL 214
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 77.4 bits (182), Expect = 1e-14
Identities = 43/117 (36%), Positives = 61/117 (52%)
Frame = +1
Query: 430 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 609
WL+ ML YN++GG+ ++ KP T + GW QAY +VLD
Sbjct: 46 WLESMLDYNVLGGEKN-----MLFRNNATKPNNGT-------LRYGW---QLQAYFLVLD 90
Query: 610 DIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYIKMFEL 780
DIMD S RRG PCW+R P+VG+ A ND L++ S + + FR Y+ + +L
Sbjct: 91 DIMDNSQTRRGKPCWFRLPKVGL-IAINDGLVLRSQISRIFRRYFRGKSYYVDLLDL 146
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +1
Query: 430 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLG 567
WL +M+ YN+ GGK RG++ + SY +++ +VTE +AC LG
Sbjct: 84 WLAQMIDYNVPGGKLNRGLSVIDSYLLLKQGSEVTEDDFFLACVLG 129
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/117 (25%), Positives = 60/117 (51%)
Frame = +1
Query: 430 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 609
W+ +ML YN+ GGK RG++ V SYK ++ +++ + +A LG C ++ + C+++
Sbjct: 47 WIDRMLDYNVPGGKCNRGLSVVDSYKLLKGTNVLSQEDMFLASTLG-CFKLTFS-CLMIS 104
Query: 610 DIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYIKMFEL 780
++ V VG + A ND +++ + + L+ +FR Y + +L
Sbjct: 105 WMILTLDV------------VG-SIAINDGIILRNHITRMLRLHFRGKLYYADLLDL 148
>12_01_0979 -
9914779-9915327,9915409-9915536,9915947-9916050,
9919832-9919946,9921036-9921528
Length = 462
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +1
Query: 463 GGKHTR-GITTVISYKTIEKP---EKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSS 630
GGK R + ++S T E E TEH +L +EM ++ DD++D S
Sbjct: 180 GGKRLRPALVFLVSRATAELAGLLELTTEHQ-----RLAEIIEMIHTASLIHDDVIDDSG 234
Query: 631 VRRGMPCWYRRPEVGITCAFNDSLLIHSSLF 723
+RRG ++ + D + SS F
Sbjct: 235 MRRGKETIHQLYGTRVAVLAGDFMFAQSSWF 265
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 347 FFSLIISRFFEAVVIFALLFLYLI 276
FFSL I +F ++ +FAL+F Y+I
Sbjct: 362 FFSLSIRKFLISIAVFALVFFYMI 385
>05_07_0261 +
28764571-28764733,28766039-28766153,28766241-28766344,
28766571-28766698,28766765-28767328
Length = 357
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +1
Query: 463 GGKHTR-GITTVISYKTIEKP---EKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSS 630
GGK R + ++S T E E TEH +L +EM ++ DD++D S
Sbjct: 70 GGKRLRPALVFLVSRATAELAGLLELTTEHQ-----RLAEIIEMIHTASLIHDDVIDDSG 124
Query: 631 VRRGMPCWYRRPEVGITCAFNDSLLIHSSLF 723
+RRG ++ + D + SS F
Sbjct: 125 MRRGKETIHQLYGTRVAVLAGDFMFAQSSWF 155
>04_04_0099 + 22795734-22795784,22795866-22796369
Length = 184
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 570 VCRNVSGILHCAG*HYGWFKRSTRHALLVSASGSGHHMRL*RLSFDTQ 713
VCR + + + AG H+GWF +S V + +G H R R +FD Q
Sbjct: 111 VCR-MKLVSNGAGEHHGWFCKS------VEVTVAGPHARCNRAAFDVQ 151
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 27.9 bits (59), Expect = 9.6
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 349 MFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVIS-YKTIEKPE 525
MFD+++ EV+ L+N + VPQ L K + + ++G+ +++ Y KPE
Sbjct: 133 MFDEIVMEVMWGLKNLMHVL-VPQEKMKLSKDDYLPM-----SQGLYMLLNRYGLDVKPE 186
Query: 526 KVTEHTLKMACKLGWC 573
VT+ +K+AC L C
Sbjct: 187 MVTDSIIKLACFLLDC 202
>02_03_0118 -
15451031-15451123,15451744-15451831,15451914-15451985,
15452896-15453018,15453541-15453629
Length = 154
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 193 RLHDIVDMSVFNFLKITRKVTYKYWPQLIRY 285
R + I+D+ + N++K+T K+ Y Y +L Y
Sbjct: 71 RTNLIIDLKIQNYVKLTYKLHYSYIEKLSMY 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,742,116
Number of Sequences: 37544
Number of extensions: 434929
Number of successful extensions: 919
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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