Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H18
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      24   1.1  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   10.0 

>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
 Frame = +1

Query: 178 EATSNQTAP--PSKVDL----RNMIVVPPNCPAGYK 267
           EA SN   P      DL    R +I VPP CP G K
Sbjct: 31  EAVSNDMQPLEARSADLVPEPRYIIDVPPRCPPGSK 66


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +1

Query: 178 EATSN--QTAPPSKVDL----RNMIVVPPNCPAGYK 267
           EA SN  Q+      DL    R +I VPP CP G K
Sbjct: 31  EAVSNDRQSLEARSADLVPEPRYIIDVPPRCPPGSK 66


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 296  TSRQTPSGPILYPAGQLGGTTIILRRSTFDGGA 198
            T +  PS P+LY       + ++  +S  +GGA
Sbjct: 1400 TVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGA 1432


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 296  TSRQTPSGPILYPAGQLGGTTIILRRSTFDGGA 198
            T +  PS P+LY       + ++  +S  +GGA
Sbjct: 1396 TVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGA 1428


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 421 KNQNANFYITTLH*KTH 371
           KNQN N Y +  H +TH
Sbjct: 116 KNQNNNHYTSHQHLRTH 132


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 236 LCHLIALLDIRW 271
           + HL  LLD++W
Sbjct: 283 ILHLFCLLDVQW 294


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 4/12 (33%), Positives = 9/12 (75%)
 Frame = +2

Query: 236 LCHLIALLDIRW 271
           +CH++ + D+ W
Sbjct: 292 ICHILCMSDLHW 303


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 204 WGSLIGGGFFTRASF 160
           WG  +  GF T  SF
Sbjct: 185 WGRFVPEGFLTSCSF 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,398
Number of Sequences: 438
Number of extensions: 2017
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)