Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H17
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   1.1  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        25   1.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   8.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 361 RGSENFLPRSRLKPNTVFFILVTIWFLAATP 269
           R SEN    +  K   V  + +++WF+A TP
Sbjct: 263 RSSENQNTSAECKLAKVALMTISLWFMAWTP 293


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 361 RGSENFLPRSRLKPNTVFFILVTIWFLAATP 269
           R SEN    +  K   V  + +++WF+A TP
Sbjct: 13  RSSENQNTSAECKLAKVALMTISLWFMAWTP 43


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 128 HSSHCDRQ 105
           H SHCDRQ
Sbjct: 39  HCSHCDRQ 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,511
Number of Sequences: 438
Number of extensions: 5127
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)