Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H16
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.4  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    27   1.8  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    24   3.1  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    26   5.5  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   9.5  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 101 LPPEINKELCRLLDNFDY----WEELAGNYMMYTAMDVIEIKEKARHQGISPTEYL 256
           LP   +  +C LL+N  +    +EEL     +   ++ +++ E  +   IS T YL
Sbjct: 752 LPFRFSPTMCILLNNIHFAMHAYEELEQKIDLQRLIEALDVAESTKRHKISATNYL 807


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 349 G*PPHGRNVLHAVQQHKQFLNSMVLLPPALQEVFRWGYALMTSLLFYFDDV 197
           G  PH  + L  + Q  Q  NS +    +  +   WG  L+T  L   DD+
Sbjct: 296 GASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDL 346


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect(2) = 3.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 418 QRAHRRRAEGHHQQRL 465
           +R+H R  E HHQQ+L
Sbjct: 107 KRSHSRHEEIHHQQQL 122



 Score = 20.6 bits (41), Expect(2) = 3.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 559 LGHQHQHRH 585
           L HQ+QH+H
Sbjct: 124 LNHQYQHQH 132


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 101 LPPEINKELCRLLDNFDYWEELAGNYMMYTAMDVIEIKEKARHQGISPTEYLLEC 265
           LP E  +  C ++ +    E L   YM Y  + V + ++   +  I+PT   L+C
Sbjct: 175 LPDEAAETPCEMIKSLGKSELLRLRYMNYPELLVNQCEKLVINACINPTTATLDC 229


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -3

Query: 341 ASWQECASCGTATQTVP-QF-DGSSAPSTPGGIPLG--ICP--DDEPSL 213
           A WQ     G+    +P QF   SS PSTP  + +G   CP   ++PSL
Sbjct: 186 AEWQP--PTGSVNSNMPFQFHQSSSVPSTPSEVAMGHNFCPMSRNDPSL 232


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 119 KELCRLLDNFDYWEE 163
           K LC +++ FD WEE
Sbjct: 291 KHLCEMVEPFDEWEE 305


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 242 PTEYLLECWGQKNHRIEELFVL 307
           P+E + +CW Q   + EELFV+
Sbjct: 44  PSEKISKCWYQLPAKQEELFVV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,752
Number of Sequences: 5004
Number of extensions: 54988
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)