Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H14
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    68   1e-12
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   3.4  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    26   5.9  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 32/84 (38%), Positives = 50/84 (59%)
 Frame = +2

Query: 443 KKDASTKPERRAKDTDMLNTRTGGAYIPPARLRMMQAQITDKSSIAYQRLAWEALKKSXX 622
           +K +  + + +A+   ++ TR+GG YIPPA+L+ +QAQ+TD ++  YQR+ WEALKKS  
Sbjct: 69  EKKSHNELDPKAQIKKLMETRSGGTYIPPAKLKALQAQLTDVNTPEYQRMQWEALKKSIN 128

Query: 623 XXXXXXXXXXXXXXXXELLKENIV 694
                           EL +ENI+
Sbjct: 129 GLINKVNKSNIRDIIPELFQENII 152


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 5   TIKMSKQNGCFIKVKLDFT*CTFYFFIEIN--FMILHIILKMNS 130
           TIK+ KQ  C  K K +F    F++ ++      +LH  L+  S
Sbjct: 800 TIKLQKQKACLNKYKEEFADVIFFYLVDTEQYASLLHDFLEYQS 843


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 484 IFCASFWLCRGIFFCFWLFLCVFNSFIF 401
           ++ +SF +   +FF F+L +CVF SF+F
Sbjct: 145 VYFSSFPILHFLFF-FFLCVCVFLSFLF 171


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 688 VFFQ*FLYNDTYVTDINFV 632
           V F  FLY+ TY+TD NFV
Sbjct: 193 VGFTMFLYHKTYLTDKNFV 211


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 159 IKFFYKKFNCSLVVPKQKS*EWRRLTPSRRKINTRKMMKGVGPKGRDGLDLDL 317
           I F Y+K       P   S   R+    R+KI  ++  K +  K R  LD+D+
Sbjct: 139 INFIYEKNERLWSDPFVSSQRLRKQFRERKKIEKKQEAKDLSLKNRAALDIDI 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,899
Number of Sequences: 5004
Number of extensions: 41747
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)