Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_H14
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 64 1e-10
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 63 2e-10
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 31 1.2
06_03_1489 + 30492702-30493760 30 2.0
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 28 8.1
02_03_0382 + 18352508-18352841,18353817-18354028,18354190-183542... 28 8.1
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 28 8.1
01_05_0345 + 21181114-21181222,21181306-21181367,21181505-211815... 28 8.1
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 63.7 bits (148), Expect = 1e-10
Identities = 33/90 (36%), Positives = 47/90 (52%)
Frame = +2
Query: 425 QKEPETKKDASTKPERRAKDTDMLNTRTGGAYIPPARLRMMQAQITDKSSIAYQRLAWEA 604
++ P+ +K+ + P +M+ RTGG YIPP R+ M ++ DKSS YQRL+W+A
Sbjct: 82 RRSPQRRKEPTPPPPLLP---EMIPGRTGGIYIPPFRMAQMMREVEDKSSAEYQRLSWDA 138
Query: 605 LKKSXXXXXXXXXXXXXXXXXXELLKENIV 694
LKKS EL EN+V
Sbjct: 139 LKKSINGLVNKVNATNVKNIVPELFAENLV 168
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/93 (34%), Positives = 47/93 (50%)
Frame = +2
Query: 416 KDTQKEPETKKDASTKPERRAKDTDMLNTRTGGAYIPPARLRMMQAQITDKSSIAYQRLA 595
++ ++ P+ K+ P +++ RTGG YIPP R+ M ++ DKSS YQRL+
Sbjct: 177 EERRRSPDRKEPTPPLPPPPPLLPELIPGRTGGIYIPPFRMAQMMREVEDKSSPEYQRLS 236
Query: 596 WEALKKSXXXXXXXXXXXXXXXXXXELLKENIV 694
W+ALKKS EL EN+V
Sbjct: 237 WDALKKSINGLVNKVNATNIKNIVPELFAENLV 269
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 30.7 bits (66), Expect = 1.2
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 535 SCWWNVCTSCSSIQHISIFCASFWLCR 455
+C W++C+SC H + ++ LC+
Sbjct: 157 NCGWHICSSCEKAVHYMCYTCTYSLCK 183
>06_03_1489 + 30492702-30493760
Length = 352
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 410 RVKDTQKEPETKKDASTKPERRAKDTD 490
R+++ + P T DAS+KP RR ++TD
Sbjct: 114 RLEEGRGGPPTTGDASSKPRRRGRETD 140
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 27.9 bits (59), Expect = 8.1
Identities = 7/28 (25%), Positives = 16/28 (57%)
Frame = -2
Query: 535 SCWWNVCTSCSSIQHISIFCASFWLCRG 452
+C W++C++C + ++ LC+G
Sbjct: 193 TCGWHLCSTCEKAVQYMCYTCTYSLCKG 220
>02_03_0382 +
18352508-18352841,18353817-18354028,18354190-18354277,
18355017-18355474
Length = 363
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 392 KAREDKRVKDTQKEPETKKDASTKPERRAKDTD 490
+++E+K+ D +KE E +KD S E KD +
Sbjct: 282 ESKEEKKEGDDEKEKEKEKDDSNAAEVEEKDKE 314
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 520 VCTSCSSIQHISIFCASFWLCRGIFFC 440
+C+ C + Q + C S +C G +FC
Sbjct: 108 ICSLCGTEQEVRQVCISCGVCMGKYFC 134
>01_05_0345 +
21181114-21181222,21181306-21181367,21181505-21181588,
21182069-21182123,21182843-21182969,21183129-21183179,
21183275-21183374
Length = 195
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 299 VSAFWTYAFHHLPRIYLSSAWC*SSPFL 216
V+ FWTY LPRI AW P +
Sbjct: 136 VALFWTYYLLRLPRIRWDVAWLPFGPLI 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,739,105
Number of Sequences: 37544
Number of extensions: 239443
Number of successful extensions: 674
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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