Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_H12
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 85 8e-18
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 80 4e-16
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 79 5e-16
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 77 3e-15
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 75 1e-14
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 74 2e-14
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 73 3e-14
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 71 1e-13
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 71 2e-13
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 70 3e-13
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 66 7e-12
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 63 4e-11
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 62 1e-10
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 60 2e-10
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 60 3e-10
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 59 6e-10
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 56 7e-09
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 52 1e-07
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 51 2e-07
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 43 4e-05
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 42 7e-05
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 42 1e-04
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 3.7
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 26 6.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 6.5
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 8.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.6
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 85.4 bits (202), Expect = 8e-18
Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Frame = +1
Query: 130 KDYYKILGITKGASDDDIKKAYRKLALKYHPDKNKA-AGAEERFKEVAEAYEVLSDKKKR 306
KD+YKILG++K A+D +IKKAYRKLAL YHPDKN AE RFKEV EAY +LSD + R
Sbjct: 348 KDHYKILGVSKEATDIEIKKAYRKLALVYHPDKNAGNLEAEARFKEVGEAYTILSDPESR 407
Query: 307 EIYDA 321
+D+
Sbjct: 408 RRFDS 412
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 79.8 bits (188), Expect = 4e-16
Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Frame = +1
Query: 133 DYYKILGITKGASDDDIKKAYRKLALKYHPDKN--KAAGAEERFKEVAEAYEVLSDKKKR 306
+YY +LGI+ A+ DIKKAYRKLA+KYHPDKN GA E+F++++EAY+VL D+K R
Sbjct: 8 EYYDLLGISTDATAVDIKKAYRKLAVKYHPDKNPDDPQGASEKFQKISEAYQVLGDEKLR 67
Query: 307 EIYD 318
YD
Sbjct: 68 SQYD 71
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 79.4 bits (187), Expect = 5e-16
Identities = 38/71 (53%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
Frame = +1
Query: 112 IQIKMGKDYYKILGITKGASDDDIKKAYRKLALKYHPDKNK--AAGAEERFKEVAEAYEV 285
+Q + +DYY IL I+ A D IKK+YR+LA+ YHPDKN+ A E+F+++AEAY+V
Sbjct: 2 VQRVVDRDYYDILNISVDADGDTIKKSYRRLAILYHPDKNRENPEAAREKFQKLAEAYQV 61
Query: 286 LSDKKKREIYD 318
LSD K RE YD
Sbjct: 62 LSDPKLREKYD 72
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 77.0 bits (181), Expect = 3e-15
Identities = 34/60 (56%), Positives = 47/60 (78%)
Frame = +1
Query: 139 YKILGITKGASDDDIKKAYRKLALKYHPDKNKAAGAEERFKEVAEAYEVLSDKKKREIYD 318
Y++L + AS ++KKAYRKLALKYHPDKN AG ++FKE++ AYE+L+D++KR YD
Sbjct: 8 YEVLNVDVTASQAELKKAYRKLALKYHPDKNPNAG--DKFKEISRAYEILADEEKRATYD 65
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 74.5 bits (175), Expect = 1e-14
Identities = 32/64 (50%), Positives = 45/64 (70%)
Frame = +1
Query: 133 DYYKILGITKGASDDDIKKAYRKLALKYHPDKNKAAGAEERFKEVAEAYEVLSDKKKREI 312
D YK LG++K AS +IK AY KLA +YHPD N A+++F E+ +AYEVL D KK++
Sbjct: 86 DPYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVEIKQAYEVLQDPKKKKA 145
Query: 313 YDAH 324
+D +
Sbjct: 146 FDTY 149
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 74.1 bits (174), Expect = 2e-14
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +1
Query: 139 YKILGITKGASDDDIKKAYRKLALKYHPDKNKAAGAEERFKEVAEAYEVLSDKKKREIYD 318
Y L + AS+ ++KKAYRKLALKYHPDKN E++FKE++ AYEVLSD ++R++YD
Sbjct: 8 YDCLEVRPEASEAELKKAYRKLALKYHPDKN--PNGEKKFKEISLAYEVLSDPQRRKLYD 65
Query: 319 AH 324
+
Sbjct: 66 QY 67
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/52 (44%), Positives = 27/52 (51%)
Frame = +1
Query: 583 RSHSFDFHGSPSRKEKTQDPPIEHDLYVSLXDIARGCVKKMXISRRVIQQDG 738
RSH F GS + Q+ I L VSL D+ GC KKM ISR +I G
Sbjct: 187 RSHP-SFGGSRPSQPPAQNEVITRPLNVSLEDLFTGCTKKMKISRHIIDASG 237
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 73.3 bits (172), Expect = 3e-14
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = +1
Query: 136 YYKILGITKGASDDDIKKAYRKLALKYHPDKNKAAGAEERFKEVAEAYEVLSDKKKREIY 315
YY+IL + K +D +IKK+Y+KLAL+ HPDKN A A+E FK V++A++VLSD R Y
Sbjct: 114 YYEILDLKKTCTDTEIKKSYKKLALQLHPDKNHAPSADEAFKMVSKAFQVLSDPNLRAHY 173
Query: 316 D 318
D
Sbjct: 174 D 174
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 71.3 bits (167), Expect = 1e-13
Identities = 32/62 (51%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Frame = +1
Query: 142 KILGITKGASDDDIKKAYRKLALKYHPDKNKA-AGAEERFKEVAEAYEVLSDKKKREIYD 318
+ILG++K AS+ +I+KAYR+L ++HPDKN A+E+F E+ +A+EVLSD ++R+IYD
Sbjct: 10 QILGVSKDASESEIRKAYRQLTKQWHPDKNPGNEEAQEKFIEINKAHEVLSDPEQRKIYD 69
Query: 319 AH 324
A+
Sbjct: 70 AY 71
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 70.5 bits (165), Expect = 2e-13
Identities = 47/118 (39%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Frame = +1
Query: 124 MGKDYYKILGITKGASDDDIKKAYRKLALKYHPDK---NKAAGAEERFKEVAEAYEVLSD 294
M KDYY IL IT AS ++IK AY+K AL+ HPD+ + A A E+F+ V EAY VLSD
Sbjct: 1 MFKDYYAILNITPKASAEEIKYAYKKAALETHPDRVSPSARARATEQFQLVNEAYYVLSD 60
Query: 295 KKKREIYDAHXXXXXXXXXXXXXXXXXXQSFSYTFHGDPKATFAQFFGSASPFQAFFD 468
+R YD Q S + G P F Q F S S F+ F+
Sbjct: 61 NSRRAQYDRESASSSAKPRQSFFSRTNPQPQSQSQQGGPSFGFRQSF-SDSQFEQVFN 117
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 70.1 bits (164), Expect = 3e-13
Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Frame = +1
Query: 118 IKMGKDYYKILGITKGASDDDIKKAYRKLALKYHPDK----NKAAGAEERFKEVAEAYEV 285
IKM D Y +LG+ K ASD+ I++AYRK AL++HPD+ K A F +VA AY V
Sbjct: 26 IKMDIDPYSVLGVEKDASDELIRRAYRKKALQHHPDRIHDEEKKVEARIEFDKVAIAYGV 85
Query: 286 LSDKKKREIYD 318
LSDKK+R+ YD
Sbjct: 86 LSDKKRRKHYD 96
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 65.7 bits (153), Expect = 7e-12
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Frame = +1
Query: 133 DYYKILGITKGASDDDIKKAYRKLALKYHPDKNKA---AGAEERFKEVAEAYEVLSDKKK 303
+ Y LG+ K A+ D IK++Y +L+ +HPD++ A A AEE+F+ + AYEVLSD K
Sbjct: 8 ELYLALGLPKDATSDQIKESYYRLSRLFHPDRHTADQKAAAEEKFQIIQHAYEVLSDPSK 67
Query: 304 REIYD 318
+EIYD
Sbjct: 68 KEIYD 72
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 63.3 bits (147), Expect = 4e-11
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +1
Query: 133 DYYKILGITKGASDDDIKKAYRKLALKYHPDKN-KAAGAEERFKEVAEAYEVLSDKKKRE 309
DYY++LGI + A D +I +A+RK +LKYHPDKN A E+F + AY L D + R+
Sbjct: 9 DYYELLGINEDAQDQEIHRAWRKTSLKYHPDKNPNDPKAAEKFHMLQLAYNALIDVQLRK 68
Query: 310 IYDA 321
YD+
Sbjct: 69 AYDS 72
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 61.7 bits (143), Expect = 1e-10
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Frame = +1
Query: 139 YKILGITKGASDDDIKKAYRKLALKYHPDK---NKAAGAEERFKEVAEAYEVLSDKKKRE 309
Y IL + AS ++IKK+Y++LAL +HPDK ++ A ERF+ V EAY++L D + RE
Sbjct: 8 YDILEVHFEASAEEIKKSYKRLALLHHPDKAPIHEKEEAAERFRGVQEAYDILKDPESRE 67
Query: 310 IYDAH 324
+YD +
Sbjct: 68 MYDMY 72
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 60.5 bits (140), Expect = 2e-10
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Frame = +1
Query: 133 DYYKILGITKGASDDDIKKAYRKLALKYHPDKNKA--AGAEERFKEVAEAYEVLSDKKKR 306
DYY IL + K A+ I+K Y LAL+YHPD+N A +RF+ + A+EVLSD KR
Sbjct: 12 DYYAILKLQKNATFQQIRKQYLFLALQYHPDRNPGDEERAVKRFQRLQLAHEVLSDATKR 71
Query: 307 EIYD 318
IYD
Sbjct: 72 LIYD 75
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = +1
Query: 133 DYYKILGITKGASDDDIKKAYRKLALKYHPDKNKAAGAE--ERFKEVAEAYEVLSDKKKR 306
DYY ILG +S +I++ Y KL L+YHPD+N AE +F+ + +A+EVL D K R
Sbjct: 12 DYYTILGAESTSSYVEIRQQYLKLVLRYHPDRNPGREAEVLPQFQLIQKAHEVLKDPKLR 71
Query: 307 EIYD 318
E++D
Sbjct: 72 ELFD 75
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 59.3 bits (137), Expect = 6e-10
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Frame = +1
Query: 133 DYYKILGITKGASDDDIKKAYRKLALKYHPDK------NKAAGAEERFKEVAEAYEVLSD 294
D Y+ILGI KG S DD+++ Y++L++K+HPDK E+ + E+ AY L+D
Sbjct: 98 DPYEILGIAKGTSVDDVRRHYKRLSIKFHPDKVRNMVNTTREEVEKHYIEITNAYRALTD 157
Query: 295 KKKREIY 315
K RE Y
Sbjct: 158 DKTRENY 164
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 55.6 bits (128), Expect = 7e-09
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Frame = +1
Query: 130 KDYYKILGITK---GASDDDIKKAYRKLALKYHPDKNKAAG---AEERFKEVAEAYEVLS 291
+D+Y +LG++K A + IKKA+ K LK+HPDK A+G + FK + +AYE+LS
Sbjct: 96 QDHYAVLGLSKYRYKADTEQIKKAHLKKVLKHHPDKKAASGNINDDSFFKCIQKAYEILS 155
Query: 292 DKKKREIYDA 321
D +R +D+
Sbjct: 156 DPVRRRQFDS 165
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +1
Query: 133 DYYKILGITKGAS--DDDIKKAYRKLALKYHPDKNK-AAGAEERFKEVAEAYEVLSDKKK 303
++Y +L + G + DD+IK+AYRK L +HPDK K +V EAY+VLS +K
Sbjct: 2 NHYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEKD 61
Query: 304 REIY 315
R+ Y
Sbjct: 62 RQQY 65
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 51.2 bits (117), Expect = 2e-07
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +1
Query: 133 DYYKILGITKGASDDDIKKAYRKLALKYHPDKNKA-AGAEERFKEVAEAYEVLSDKKKRE 309
D Y+IL + + +IK YRKLAL+YHPD+N E F ++ AY +LS+ KR+
Sbjct: 9 DCYEILQVNHDSDLQEIKANYRKLALQYHPDRNPGIEDYNEIFSQINAAYNILSNDDKRK 68
Query: 310 IYD 318
++
Sbjct: 69 WHE 71
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 139 YKILGITKGASDDDIKKAYRKLALKYHPDKNK-AAGAEERFKEVAEAYEVLSDKKKREIY 315
Y +L I G S DDI+ YRK +L HPDKN+ A + F + +A L + K RE
Sbjct: 33 YDVLDILPGMSVDDIRNLYRKKSLMIHPDKNRDNPKAADAFDILKKAESDLVNDKIRESL 92
Query: 316 DA 321
D+
Sbjct: 93 DS 94
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 42.3 bits (95), Expect = 7e-05
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 14/74 (18%)
Frame = +1
Query: 139 YKILGITKGASDDDIKKAYRKLALKYHPDKNKAAGA--------------EERFKEVAEA 276
Y+IL + + + +DIK+ Y +L K+HPDK K A EE F+ + A
Sbjct: 34 YEILELPRTCTANDIKRKYIELVKKHHPDKMKNASQLAPTESPPEINKHNEEYFRLLLAA 93
Query: 277 YEVLSDKKKREIYD 318
+LSDK++RE YD
Sbjct: 94 NALLSDKRRREEYD 107
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/67 (31%), Positives = 38/67 (56%)
Frame = +1
Query: 118 IKMGKDYYKILGITKGASDDDIKKAYRKLALKYHPDKNKAAGAEERFKEVAEAYEVLSDK 297
+K +Y++L + AS +I +AYRK ++ YHPDKN ++E + + +L +
Sbjct: 35 LKNKATFYELLEVPTKASIKEINRAYRKKSILYHPDKNPK--SKELYTLLGLIVNILRNT 92
Query: 298 KKREIYD 318
+ R+ YD
Sbjct: 93 ETRKRYD 99
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +1
Query: 115 QIKMGKDYYKILGITK-GAS-----DDDIKKAYRKLALKYHPDKNKAAGAEERFKEVAEA 276
+I GK+ Y+ IT+ G S +DD A+RK + K +NK A + +A
Sbjct: 46 RISRGKNGYENRKITEEGDSKSSELNDDYLDAHRKSSTKKKSSQNKQAKESKLLDPIAFQ 105
Query: 277 YEVLSDKKKREI 312
+++ ++ REI
Sbjct: 106 HKIALEEDDREI 117
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = -3
Query: 171 RSTFCYSQYFIVVFAHFDLYCIRETLILDNLSTIYEIL 58
R F + Y +V+F +C+R +++ ++E L
Sbjct: 26 RKRFSFLDYVVVIFLTVVAFCVRAQRLMNPAKVVFEEL 63
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 102 ETLILDNLSTIYEILANNHNAKLNTSLQQY 13
ETL DN T YE+ H A L+ QY
Sbjct: 1296 ETLSADNEITFYEVSDIQHEANLDIESFQY 1325
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 601 FHG-SPSRKEKTQDPPIEHDL 660
FHG +P +KE Q+ I+HDL
Sbjct: 1068 FHGYNPEKKELLQEVVIDHDL 1088
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = -2
Query: 601 NQSCDCGKHHRGHLVAPAPCP-CY*KDPYPHPCRGRRT 491
N+ CG H H+ PCP C PC RT
Sbjct: 590 NKKLSCGNHFCQHMCHRGPCPRCLEASFEELPCTCGRT 627
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,452
Number of Sequences: 5004
Number of extensions: 57160
Number of successful extensions: 190
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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