Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H10
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        28   0.55 
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    25   6.8  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    24   9.0  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 157  TQGSSVQWAFSGHPYSVVLASRAITATIRNTIKYCLA 47
            T  SS +WA  GH  +V  A  ++  +I+  ++ C+A
Sbjct: 1174 TGSSSSEWAVRGHKENVEKAIASLEKSIKQVMENCIA 1210


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 230 RRLSLQRGQKMCAHF*LLKCHNDL*SFFVILLNVQI 337
           + L+ QR +++C H  ++  HND    F  LL VQ+
Sbjct: 9   KELAQQRFKEICKHAKIVDTHND----FPYLLRVQL 40


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 143 SPMGIFRASIFGSAGLESHHGDNQEHD 63
           SP  +F  S+   AG+E  H D Q H+
Sbjct: 12  SPRVLFCVSVAAVAGVEVEHVDVQPHN 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,223,482
Number of Sequences: 5004
Number of extensions: 20335
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)