Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_H10
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0496 + 3939731-3939758,3940459-3942773 32 0.23
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 29 1.3
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524... 27 5.1
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241... 27 5.1
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799... 27 6.7
06_03_0548 + 22004338-22006746 27 8.8
06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711 27 8.8
05_01_0290 + 2270749-2271037,2272227-2272363,2272660-2272805,227... 27 8.8
02_04_0349 + 22222091-22222639,22222718-22223695 27 8.8
01_06_1681 - 39129620-39130120 27 8.8
01_06_1588 + 38474698-38477169 27 8.8
>12_01_0496 + 3939731-3939758,3940459-3942773
Length = 780
Score = 31.9 bits (69), Expect = 0.23
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 223 WQV*MRAPT-QAVLVRYGSSQVLTQGSSVQWAFSGHPYSVVLASRAITATIR 71
WQ+ A +A L+ G+ V QG S+ W HP + +L + +TAT +
Sbjct: 101 WQISSSAEAVRAELMDSGNLVVKDQGGSILWQSFDHPTNTLLPMQPVTATAK 152
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 179 VRVVAGPHAGVISPMGIFRASIFGSAGLESH 87
+R + GP+ G+ +FR SIFG AG ES+
Sbjct: 247 MRRMFGPNGGIGIAEMLFRTSIFGLAGAESN 277
>06_02_0008 -
10552066-10552116,10552224-10552323,10552394-10552449,
10553950-10557180
Length = 1145
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 72 LIVAVMALEASTTEYGCPENAHWTDDPCVRTCDDPYL 182
L++AV+A+ + P WTDD V DP L
Sbjct: 101 LLLAVLAVSVTYNAGLSPPGGFWTDDSPVHHAGDPLL 137
>05_05_0051 +
21923402-21923763,21923861-21923951,21924048-21924196,
21924279-21924522,21924664-21924768,21924842-21925024,
21925118-21925319,21925896-21926372,21926680-21926771,
21927265-21927444
Length = 694
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 135 HWTDDPCVRTCDDP 176
HWT PCV C DP
Sbjct: 143 HWTFAPCVAVCRDP 156
>01_06_1440 + 37378121-37378958,37379344-37379494,37379567-37379936,
37380021-37380431,37380522-37380820,37380897-37381155,
37381248-37381497,37381744-37381875,37381936-37382208,
37383023-37383267
Length = 1075
Score = 27.1 bits (57), Expect = 6.7
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = -1
Query: 212 NEGADASGVSQVRVVAGPHAGVISPMGIFRASIFGSAGLESHHG----DNQEHDKVLFGG 45
+ GA AS S + PHAG F A IFG+ SH G +Q +D L G
Sbjct: 885 SSGAFASSSSHGASIPRPHAG-------FAAGIFGTGASSSHAGRTGPTSQFYDDDLHGA 937
Query: 44 HLRDI 30
D+
Sbjct: 938 DHHDV 942
>06_03_0548 + 22004338-22006746
Length = 802
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 196 QAVLVRYGSSQVLTQGSSVQWAFSGHPYSVVLASRAITATIR 71
QA L+ G+ V ++G ++ W P +L ++ ITA I+
Sbjct: 124 QAKLLNTGNLIVKSKGDTILWESFAFPTDTLLPTQNITARIK 165
>06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711
Length = 81
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 126 ENAHWTDDPCVRTCDDPYLTNTACVGALIQ 215
EN HW D + C+ NTA G++ Q
Sbjct: 47 ENIHWLCDLVISMCNTIRRENTALAGSICQ 76
>05_01_0290 +
2270749-2271037,2272227-2272363,2272660-2272805,
2272853-2272877
Length = 198
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 196 QAVLVRYGSSQVLTQGSSVQWAFSGHP 116
QA + +++LTQ SV WAFS P
Sbjct: 156 QAAIKALDGTELLTQIISVDWAFSNGP 182
>02_04_0349 + 22222091-22222639,22222718-22223695
Length = 508
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 208 RAPTQAVLVRYGSSQVLTQGSSVQ--WAFSGHPYSVVLASR 92
RAP V V YGS V++ V+ W +G Y+ + R
Sbjct: 307 RAPRSVVYVNYGSIAVMSNQQLVEFAWGLAGSGYAFLWVIR 347
>01_06_1681 - 39129620-39130120
Length = 166
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 116 IFGSAGLESHHGDNQEHDKVLFGGHLRDIFQTTAFQ 9
+ S GL+ H G++++ ++ GGH R + A +
Sbjct: 104 VTSSNGLQGHTGEDEDDNEEATGGHGRGVLPEVAVE 139
>01_06_1588 + 38474698-38477169
Length = 823
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 205 APTQAVLVRYGSSQVLTQGSSVQWAFSGHPYSVVLASRAITATIR 71
A A L G+ V + G V W +P +L + +TAT R
Sbjct: 122 AAAAAELTDSGNLVVTSHGGDVLWQSFDYPTDTLLPGQPVTATAR 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,059,856
Number of Sequences: 37544
Number of extensions: 140430
Number of successful extensions: 413
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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