Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H08
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    44   2e-05
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   2.9  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   2.9  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   3.8  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   5.0  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   6.7  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   8.8  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   8.8  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 371 IAKKQVSELSEQFQAALVAYDEG-LSDDKILAAAIWRRFYSLSENTDVENVEKIVSFIRR 547
           I+   + +L +Q   A+  YD+G L  D +LA ++WR  +    + D+  +E IV FIR 
Sbjct: 192 ISGMYLKDLFQQQTGAIFGYDQGMLGSDAVLATSVWRNLFVGRPDVDLVILETIVKFIRL 251

Query: 548 QILILDKISSEE 583
            +  L  +S+++
Sbjct: 252 NVYRLSCLSTDD 263


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = +3

Query: 657  FENVVANRIIYKNCS--KCFI 713
            F++ + NR+IYKNCS  K FI
Sbjct: 954  FDSGIPNRLIYKNCSWHKTFI 974


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +2

Query: 332 GWMDQDRTGANPSIAKKQVSELS-EQFQAA----LVAYDEGLSDDKILAAAIWRRFYSLS 496
           GW D   + ANP +A+ + +  S  Q  AA    +   DE LS+ K  A  + R    L 
Sbjct: 140 GWGDLVNSAANPDVAENEGNTPSGAQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLE 199

Query: 497 ENTDVE 514
             T VE
Sbjct: 200 NATKVE 205


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +2

Query: 158 LKETKMLNSRV-IAQVLLQQRH-KIRNICNPGIIKCNKIYREHSTVAAE 298
           L E+K+ NS++   Q L+ +R  +I N+   GI + N+I+R+ ST+  E
Sbjct: 155 LTESKISNSQLEYQQRLINERQGEIENLTQ-GINELNEIFRDLSTIINE 202


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 470 IWRRFYSLSENTDVENVEKIVSFIRRQILILD 565
           +W  + S   N ++EN+EKI+  +  ++L  D
Sbjct: 288 LWAVYESAVSNRNLENIEKIIKALNIKVLPRD 319


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 307 IAIFSSNCAVFSINLIALDDSRVTNISNFVSLL*QYLGYYS-AVQHFCFFEII 152
           I  FS   +   +N +++    +  I  FVS   QYLG YS + Q F    +I
Sbjct: 60  ICAFSITGSGLEVNTMSIPFYLIFGIFAFVSFTTQYLGIYSFSFQPFQLLNVI 112


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 166 NKNAEQPSNSPSIVTTTTQNSKYL 237
           +KN E+P N   I T  T NS+YL
Sbjct: 465 SKNYEKPINLRFISTPGTNNSRYL 488


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 100 FTLNKVNFLKSKFINQWKLSQRNKNAEQPSNSPS 201
           F +NK++ + S+ +N+W    RN     P  S S
Sbjct: 199 FVINKIDLVPSEVLNKWVTYLRNFFPTIPMRSAS 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,068
Number of Sequences: 5004
Number of extensions: 56565
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)