Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H08
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715     29   5.3  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    28   7.0  

>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
          Length = 456

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 410 QAALVAYDEGLSDDKILAAAIWRRFYSLSENTDVENV 520
           +AA V+ DEGL D K+  A+I    Y+LS    +E V
Sbjct: 163 RAARVSLDEGLEDKKVCLASIEFTGYALSWWNQLERV 199


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -1

Query: 521 LHFQHLYFLIMNKIFSILLLLKFYHH*DLHRRLQGQLEIVQRALILVSLQLM 366
           + F+ L+ +I   I S+   L F+H+ +L      + E+V++ +ILV  +L+
Sbjct: 438 ISFRVLFAMIQENISSVARELLFHHYEELKENKITREEMVKQMIILVGEKLL 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,479,867
Number of Sequences: 37544
Number of extensions: 294335
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)