Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H07
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570...    31   0.66 
04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106...    29   3.5  
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    28   6.2  
07_03_1713 + 28939446-28939574,28939674-28940231,28940338-289404...    27   8.2  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   8.2  

>12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,
            5704654-5704873,5705303-5707207
          Length = 1174

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 339  EDINHGFQQVKTAD*FYLKKIANSSRNLHNNVKDPSYVFYD 461
            ED++HG + +K  D + ++K  N  RN++ NV  PS +  D
Sbjct: 1088 EDLSHGIKAMKIVDSYGVQKDQN-GRNVNRNVVSPSKLHSD 1127


>04_04_0338 +
           24509698-24510042,24510373-24510490,24510539-24510642,
           24510823-24511491
          Length = 411

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 MSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAA 138
           ++W     C+  A   LL F G+M G +G A+
Sbjct: 315 LAWRTAFVCVTTAASTLLPFFGSMVGLIGAAS 346


>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 7/28 (25%), Positives = 21/28 (75%)
 Frame = -2

Query: 145 RPHLLTRTRQPKSKE*LQPSSLYKFICV 62
           RP+   ++++P++ +   PS+++K++C+
Sbjct: 3   RPNTRNKSKRPRADDCESPSAVFKYVCI 30


>07_03_1713 +
           28939446-28939574,28939674-28940231,28940338-28940460,
           28940676-28940912
          Length = 348

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 303 EKNDETANQRKREDINHGFQQVKTAD*FYLKKIANSSRNLHNNVKDPSYV 452
           E  DE+    + +D+ HGF+ ++  +  YL   A      H  V D + V
Sbjct: 52  EYQDESVLWTESKDVGHGFRCIRMVNNIYLNLDAFHGDKSHGGVHDGTTV 101


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +1

Query: 121 VYGLEGAAVPNDPNIFPINANSFSPASLMQGMSNIQDMASKVGLGPNMNGAAISTIVD-- 294
           V  L+   +   P+IF + AN+++   L +   N+  +    G+ PN+    ++ +++  
Sbjct: 354 VAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNL--VMLNLLINAF 411

Query: 295 -SAGKKMTKLLISENGKISTM 354
            +AG+ +  L + ++ K S M
Sbjct: 412 GTAGRHLEALAVLQHIKDSGM 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,402,784
Number of Sequences: 37544
Number of extensions: 248229
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)