Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_H02
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13875-9|AAA21160.3| 403|Caenorhabditis elegans Hypothetical pr... 58 5e-09
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 29 3.2
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z36719-4|CAA85315.2| 513|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z92827-5|CAB07325.1| 732|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 28 7.4
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un... 28 7.4
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 28 7.4
U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 7.4
U53154-7|AAC25857.1| 356|Caenorhabditis elegans Nuclear hormone... 27 9.8
AF273783-1|AAG15132.1| 358|Caenorhabditis elegans nuclear recep... 27 9.8
>U13875-9|AAA21160.3| 403|Caenorhabditis elegans Hypothetical
protein C26E6.6 protein.
Length = 403
Score = 58.4 bits (135), Expect = 5e-09
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Frame = +3
Query: 219 RQPRFRPPYWYVP-KERVWTDDY-LTKENKQFLEEVI-KDKLEAQT-ALEKKALTSPILN 386
R+ P W P KE V +++ K LE VI K+ L A T A + T+ +
Sbjct: 35 RRRTLTPAPWLPPVKESVPKSSVGISQGTKNLLETVIEKETLAASTIAFQNSQETNVSVV 94
Query: 387 DVKKNVTWTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEE-YKPM 563
D+ + ++RVGL+ RKIG P W +G ++ T+L+V +NHV+ PE YK
Sbjct: 95 DIPDS------SRRVGLVVRKIGMLPQWTNEGNRILCTVLEVDENHVVSITSPEAWYKSS 148
Query: 564 IKSNVKWVEKQ-KYGCILXGAENIDPSVVTKDYCGIFDSVGM 686
K + + GA N DP+ T Y F G+
Sbjct: 149 AVGKRKAFNRHGPMWRVTVGAGNDDPTKYTLGYRRQFVRAGI 190
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 465 LWCKDGKKVSTTLLQVVDNHV--IKYIPPEEYKPMIKS 572
+W + +K +QVVDN++ +K++P KP+ +S
Sbjct: 656 VWIHEHRKRDVMTVQVVDNNLVAVKHVPNSSQKPIFQS 693
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 465 LWCKDGKKVSTTLLQVVDNHV--IKYIPPEEYKPMIKS 572
+W + +K +QVVDN++ +K++P KP+ +S
Sbjct: 656 VWIHEHRKRDVMTVQVVDNNLVAVKHVPNSSQKPIFQS 693
>Z36719-4|CAA85315.2| 513|Caenorhabditis elegans Hypothetical
protein C06C3.8 protein.
Length = 513
Score = 28.7 bits (61), Expect = 4.2
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +3
Query: 180 RFDNAACNIRGASRQPRFRPPYWYVPKERVWTDDYLTKENKQFLEEVIKDKLEAQTALEK 359
R D N R+P ++ P Y P+E D + ++L+ KL Q K
Sbjct: 197 REDYLVINSSDNCRRPLYKQPCPYPPEELPKPDPERKMSHTEYLQLSESPKLGVQKIGSK 256
Query: 360 KALTSP-ILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVV 515
L ILN++ K+ K G+ + N ++ + GK ++ L+Q +
Sbjct: 257 DVLLKKVILNEISKSPAIWNTYKANGIYSEVAVN--VFKRTGKLLNIKLIQSI 307
>Z92827-5|CAB07325.1| 732|Caenorhabditis elegans Hypothetical
protein C29F7.6 protein.
Length = 732
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 350 IRKKSIDLSHFKRCQ-KKCNMD 412
I S++LSH +RCQ KKC D
Sbjct: 684 IEDASVELSHVERCQGKKCKRD 705
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
T08G11.1b protein.
Length = 3185
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 255 PKERVWTDDY-LTKENKQFLEEVIKDKLEAQTALEKKALTSPI---LNDVKKNVTWTPQT 422
P+ + +Y LT+++ F + L + LE KA + LN+++KN TP+
Sbjct: 932 PESPFFATEYALTEQSVDFRFTKLAVSLHQEGVLELKAFGEALQAQLNELQKN---TPEE 988
Query: 423 KRVGLIARKI 452
K+V ARKI
Sbjct: 989 KKVEETARKI 998
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
T08G11.1a protein.
Length = 3212
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 255 PKERVWTDDY-LTKENKQFLEEVIKDKLEAQTALEKKALTSPI---LNDVKKNVTWTPQT 422
P+ + +Y LT+++ F + L + LE KA + LN+++KN TP+
Sbjct: 932 PESPFFATEYALTEQSVDFRFTKLAVSLHQEGVLELKAFGEALQAQLNELQKN---TPEE 988
Query: 423 KRVGLIARKI 452
K+V ARKI
Sbjct: 989 KKVEETARKI 998
>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 6 protein.
Length = 2098
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 370 VNAFFSNAVCASSLSFITSSKNCLFSLVR*SSVHTL 263
VN F N + S+ +S+ CLF L+R +V+ L
Sbjct: 1510 VNEFTGNTLLTESVVKGENSRTCLFGLIRAENVYVL 1545
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/46 (28%), Positives = 30/46 (65%)
Frame = +3
Query: 258 KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVK 395
KER+ ++ +EN++ L++VI ++ Q L++++ S L+D++
Sbjct: 864 KERLLKMEHDFRENEKKLDQVIVERAVIQEQLQQESENSAELDDIR 909
>U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical
protein T24C12.3 protein.
Length = 651
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 564 IKSNVKWVEKQKYGCILXGAENIDPSVVTK 653
I V+++E CI+ G EN+ PS T+
Sbjct: 175 IPKTVEYLETHSVNCIVYGQENVFPSFFTR 204
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.9 bits (59), Expect = 7.4
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Frame = +3
Query: 282 YLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNY 461
Y + + ++F+E + KLE + LEK + N QTK L K
Sbjct: 144 YESDDKEEFIETL---KLELENRLEKLETKGSGFRMNRINKLQMYQTKMKSLTGAKYIEL 200
Query: 462 PLWCKDGKKVSTTLLQVVDNH-----VIKYIPPEEYKPMIKSN 575
P W K+ K V ++ DN V+ ++ PE+ P SN
Sbjct: 201 PAWIKNKKAVIN--IKNEDNFCFMWCVLAHLFPEKKNPQRVSN 241
>U53154-7|AAC25857.1| 356|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 42 protein.
Length = 356
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 380 FKRCQKKCNMDSSNKKSGTYCTKDRKLSI 466
F+RC ++C +D+ +K C D+ L +
Sbjct: 45 FRRCDRQCKVDTGMRKLCASCRYDKCLKV 73
>AF273783-1|AAG15132.1| 358|Caenorhabditis elegans nuclear receptor
NHR-42 protein.
Length = 358
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 380 FKRCQKKCNMDSSNKKSGTYCTKDRKLSI 466
F+RC ++C +D+ +K C D+ L +
Sbjct: 47 FRRCDRQCKVDTGMRKLCASCRYDKCLKV 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,648,012
Number of Sequences: 27780
Number of extensions: 329012
Number of successful extensions: 1016
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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