Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H01
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.8  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   6.4  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.5  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 433 FTN*E-NYVFYLDSSCSTNFHCPMCCFCYKFN 341
           FT  E N VF    +   NF+  M C  YKF+
Sbjct: 448 FTKFEFNTVFNDQRTVFANFYDAMICVAYKFD 479


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 532 VVHLIVKFE*IYSH*KIQFYITIIVVFQFEMFHLKCDY*C 651
           +V +  K   +Y H  +   +T ++   +EM+HL   + C
Sbjct: 221 LVFMCKKINKLYGHQLLLTILTYLIWTIYEMYHLAILWSC 260


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/32 (15%), Positives = 18/32 (56%)
 Frame = -3

Query: 780 KHKSSVIIKYMLLASISLEAWRRLYGHSMVTV 685
           +H+   + +   +   ++E W +L+G+ ++ +
Sbjct: 609 RHELQKLAQVYRILGETIETWNKLFGYQILLI 640


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,580
Number of Sequences: 336
Number of extensions: 3194
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)