Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_H01
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.7  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 660 SIQTLIITL*MKHLKLKHYNDSNIELDFLMGINSLKFY 547
           +I+T I+        ++ YND   +LD+ M    L  Y
Sbjct: 196 NIETYIVNTNYSSKNMREYNDPEYKLDYFMEDVELNAY 233


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 660 SIQTLIITL*MKHLKLKHYNDSNIELDFLMGINSLKFY 547
           +I+T I+        ++ YND   +LD+ M    L  Y
Sbjct: 196 NIETYIVNTNYSSKYMREYNDPEYKLDYFMEDVELNAY 233


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +2

Query: 242 KRLFSKELRCMMYGFGDDQNPYTE------SVDFLEDLVIEFITETTHRAMEVGR 388
           K  F + +  M   F    +PYT+      SVD L++L+ +  TE TH    V +
Sbjct: 450 KEKFRRWVSTMSRPFEVRYDPYTQRVEILDSVDRLDNLMAQVNTEMTHLTNAVNK 504


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 322 IDTFSIRVLIITKSIHHTS 266
           +DTFSI V ++  ++H  S
Sbjct: 313 LDTFSICVTVVVLNVHFRS 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,506
Number of Sequences: 438
Number of extensions: 3545
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)