Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_G23
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    29   0.54 
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    28   1.3  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   6.7  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -1

Query: 576 MRVQIKHLIHSIFKKVQLRTKTKKNIKIRNWRRYYTITHKNEALKINKLHFILFK 412
           MR +I ++   IF+KVQL T  +   +    R Y+ +   +EA  +N   ++ F+
Sbjct: 238 MRARIYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDFE 292


>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = +3

Query: 3   FAKISGCLI*FGSDIMKTTQVAQYALRLTYS--QQANREKMMTRSALLLATIGLGLSTFS 176
           F  +SG     G D+     +A+Y   L     QQ++  K   R  +L   +G  LS   
Sbjct: 219 FPSLSGVFTGTG-DLFSGLLLAKYREELDKRKHQQSDETKQTKRPTVLACAVGQVLSCMH 277

Query: 177 VRQMILNQSRRV*DKPVLPQQPAGASLSQTIDNAKTKRLLKKNS*MHPRRAIY 335
               +L  ++   D+ +L + P  AS    + NA+  RL++  + +  +++IY
Sbjct: 278 T---VLVNTKTYADE-ILLEDPKIASDEFLLSNARELRLIQSRTALLSKKSIY 326


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 564 IKHLIHSIFKKVQLRTKTKKNIKIRNWRRYYTITHK 457
           +KH ++S+F +V+L  +T+     RN+R    +  K
Sbjct: 563 VKHFMNSLFGRVKLNEQTEIIWHTRNYRIVEALVRK 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,435
Number of Sequences: 5004
Number of extensions: 46538
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)