Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_G17
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 270 9e-74
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 270 1e-73
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.46
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.4
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 3.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.2
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 5.6
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 5.6
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 7.4
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 9.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.8
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 25 9.8
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 9.8
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 270 bits (662), Expect = 9e-74
Identities = 123/167 (73%), Positives = 140/167 (83%)
Frame = +2
Query: 50 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 229
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 230 SSEALEAGRICCNKYLVKNCGKDQFHIRMXLHPFHVIRINKMLSCAGADRLXTGMRGAFG 409
+SEALEA RIC NKYLVK GKD FH+R+ HPFHV+RINKMLSCAGADRL TGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 410 KPQGTVTRVRIGQPIMSVRSXDRWKAQVIEALRRAKFXFPGRQKIYV 550
KP G V RV IGQ +MSVR+ D +A IEALRR ++ FPG+Q+I V
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIV 167
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 270 bits (661), Expect = 1e-73
Identities = 123/167 (73%), Positives = 140/167 (83%)
Frame = +2
Query: 50 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 229
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 230 SSEALEAGRICCNKYLVKNCGKDQFHIRMXLHPFHVIRINKMLSCAGADRLXTGMRGAFG 409
+SEALEA RIC NKYLVK GKD FH+R+ HPFHV+RINKMLSCAGADRL TGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 410 KPQGTVTRVRIGQPIMSVRSXDRWKAQVIEALRRAKFXFPGRQKIYV 550
KP G V RV IGQ +MSVR+ D +A IEALRR ++ FPG+Q+I V
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIV 167
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.46
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 74 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 250
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 251 G 253
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 131 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 250
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 165 RERPLTTFHCACTWCPTNMNS 227
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 4.2
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 152 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 295
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 250 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 134
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 117 VGVYLIPRSVSSIWV 161
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 94 FIFAVPVASRWPAPHGDLYKVTPQPRKHRPA 2
++F+ P + G L VTP P H PA
Sbjct: 223 YLFSAPSDTSHAVSPGMLTFVTPSPHSHSPA 253
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 107 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 217
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 293 KDQFHIRMXLHPFHVIRINKMLSCAGADRLXTGMR 397
+D H+RM ++ FH IN MLS + D MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 9.8
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -2
Query: 230 SAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTGSISLAGAP 51
SAVHI PS+ ++ + S S++ + + H ++S+ + SIS +
Sbjct: 67 SAVHIAPLPSSCDIDFKDYSTSAF-HLHFSPLTPNHASTEAVSNFKQSSTIPSISKSNLT 125
Query: 50 W*SLQSDTTTSKA 12
L+S+ ++ KA
Sbjct: 126 NPPLESEKSSDKA 138
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 9.8
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Frame = -2
Query: 266 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 111
C++ + PP KP + SA+ S T E S LS +R+ +W P
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553
Query: 110 SISDTVYFCSTGSI 69
SD + + GS+
Sbjct: 554 DTSDDINTIAPGSV 567
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,823
Number of Sequences: 5004
Number of extensions: 52237
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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