Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_G17
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 264 3e-71
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 258 3e-69
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 242 1e-64
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.61
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 1.9
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 28 4.3
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 7.5
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 27 7.5
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 7.5
10_08_1022 + 22337332-22339398 27 10.0
09_06_0319 - 22293869-22293906,22294539-22295808 27 10.0
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 264 bits (647), Expect = 3e-71
Identities = 121/165 (73%), Positives = 135/165 (81%)
Frame = +2
Query: 50 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 229
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 230 SSEALEAGRICCNKYLVKNCGKDQFHIRMXLHPFHVIRINKMLSCAGADRLXTGMRGAFG 409
SSEALEA RI CNKY+ KN GKD FH+R+ +HPFHV+RINKMLSCAGADRL TGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 410 KPQGTVTRVRIGQPIMSVRSXDRWKAQVIEALRRAKFXFPGRQKI 544
KPQGT RV IGQ ++SVR + EALRRAKF FPGRQKI
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKI 165
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 258 bits (631), Expect = 3e-69
Identities = 116/161 (72%), Positives = 132/161 (81%)
Frame = +2
Query: 62 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 241
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 242 LEAGRICCNKYLVKNCGKDQFHIRMXLHPFHVIRINKMLSCAGADRLXTGMRGAFGKPQG 421
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRL TGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 422 TVTRVRIGQPIMSVRSXDRWKAQVIEALRRAKFXFPGRQKI 544
T RVRIGQ ++SVR D A EALRRAKF FPGRQ++
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRV 472
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 242 bits (592), Expect = 1e-64
Identities = 111/158 (70%), Positives = 126/158 (79%)
Frame = +2
Query: 71 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 250
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 251 GRICCNKYLVKNCGKDQFHIRMXLHPFHVIRINKMLSCAGADRLXTGMRGAFGKPQGTVT 430
RI CNKY+ K+ GKD FH+R+ +HPFHV+RINKMLSCAGADRL TGMRGAFGKPQGT
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 431 RVRIGQPIMSVRSXDRWKAQVIEALRRAKFXFPGRQKI 544
RV IGQ ++SVR EALRRAKF FPGRQKI
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKI 161
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.61
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 173 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 292
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 453 MGCPMRTRVTVP*GLPNAPRIPVWSLSAPAH 361
+ CP+ + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 352 NVIMRWS**APXWDAWCVWQASGYCNTCSHWT 447
NV+ RW P AWC + S + + CS W+
Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWS 372
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 279 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 178
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 407 GKPQGTVTRVRIGQPIMSVRSXD 475
G PQ T+ R+ +G P +S++S D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 191 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 75
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
>10_08_1022 + 22337332-22339398
Length = 688
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 157 QIEDTDLGIRYTPTEPRFRIRFIFAVPVASRWPAPHGDLYKVTP 26
++ TD+ + + PR R F + AS WP PH D P
Sbjct: 216 ELGSTDVIFQTGDSIPRIRALFNLSAAAASSWP-PHPDAASADP 258
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 407 GKPQGTVTRVRIGQPIMSVRSXD 475
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,233
Number of Sequences: 37544
Number of extensions: 399801
Number of successful extensions: 1108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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