Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_G13
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 59 9e-10
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 58 2e-09
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 49 1e-06
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 38 0.002
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 34 0.029
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 28 1.5
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 4.4
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 5.9
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 26 7.8
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 58.8 bits (136), Expect = 9e-10
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +2
Query: 2 PYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDV 181
P+CK AK+ K P K EL++ ++G+ IQ L + T TVP +F +GG SD+
Sbjct: 27 PFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDL 86
Query: 182 KALYESGKLEPML 220
L SG L M+
Sbjct: 87 NKLRSSGTLTKMI 99
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/72 (37%), Positives = 44/72 (61%)
Frame = +2
Query: 2 PYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDV 181
PYC + V K +V +++ ++G+ IQ L + TG RTVP +FI+ VGG SD
Sbjct: 26 PYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDF 85
Query: 182 KALYESGKLEPM 217
+AL++ G+L+ +
Sbjct: 86 QALFKKGELDSL 97
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +2
Query: 2 PYCKLAKDVFE---KVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGG 172
PY AK + ++ P V+E+ + + ++D L+ ++ T+P +F+ G+ +GG
Sbjct: 77 PYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIFVGGHSIGGS 136
Query: 173 SDVKALYESGKLEPML 220
V+ALY+ KL+ L
Sbjct: 137 DSVRALYQEEKLQSTL 152
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/43 (30%), Positives = 30/43 (69%)
Frame = +2
Query: 92 IQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 220
+++ + + + + T+PQ++ING VGG + ++++SG+L +L
Sbjct: 82 LREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.9 bits (74), Expect = 0.029
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 86 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 220
++++ L + + T PQ++I G VGG V + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 394 SKLFNKTFFLNGFVSTQIYEHRHSPELT*NVNNILYV 284
S + K + N F+ Q Y HR+ PE+ V+ LY+
Sbjct: 569 SDVCKKLYIANLFLKFQSYSHRYVPEVITAVSQALYL 605
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 314 NLKRK*HFICTPKYKFKYANNNKTI 240
N K HF+C KF+ NN K++
Sbjct: 57 NSKANNHFLCNSPLKFEIFNNEKSV 81
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 571 VRAEIFFFSSYIFIKLCYHVLSKIDKFRLWYHVKMTEK 684
+R ++ F + I Y++LS+ F W H K E+
Sbjct: 945 IRIWMYSFGIFCLIAGVYYILSESSSFDRWMHGKHKER 982
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 400 LESKLFNKTFFLNGFVSTQIYEHRHSPELT*NVNNILYVHQNINL 266
LES L + FL+ F + H+ +N ++YVH+ +NL
Sbjct: 370 LESYLIRRNHFLS-FPLCKEQIQLHTDLFRMIINGVMYVHEGVNL 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,799
Number of Sequences: 5004
Number of extensions: 70706
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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