Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_G13
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   2.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 228 YPINIGSNFPDSYNALTSEP 169
           YPI  G +FP  Y   T+ P
Sbjct: 384 YPIGSGGSFPSLYPMATTSP 403


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 207 NFPDSYNALTSEPPPTQLPFIKT 139
           N  D+Y ++ S P  T LPF+ T
Sbjct: 917 NMLDTYESVHSFPTETGLPFVYT 939


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 289 IKCYLRFKLIQGCVCV 336
           +  Y+RFKL+  C+ V
Sbjct: 58  LNAYVRFKLVTDCIFV 73


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 499 GLHFCRLKNKLEHEHIFLNIRFQRKTMDNYICLLESK 389
           G H     N L++ H +L   + R    ++IC  E++
Sbjct: 90  GRHVRDFLNGLDNLHEYLKFSYPRMRAPSFICENETR 126


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 205 FSRFIQCFNIRTTSHTVAIYKDLRYSSETSQL 110
           F   IQ +N+   SHTV  +  L+   E S L
Sbjct: 64  FGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHL 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,862
Number of Sequences: 438
Number of extensions: 4657
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)