Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_G11
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   5.1  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   9.0  

>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 23  RFLGSSTDLTLLEADCKLLGI 85
           RF+GS T+  LL+   K LG+
Sbjct: 631 RFIGSKTETALLDMSVKELGL 651


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 20  SRFLGSSTDLTLLEADCKLLGII 88
           +R    STDL LL A CK   II
Sbjct: 367 NRIKSFSTDLNLLHAACKASDII 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,253
Number of Sequences: 5004
Number of extensions: 10424
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)