Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_G11
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   8.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   8.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 143 IVICFCLVFVQIV 181
           ++IC  LVFVQI+
Sbjct: 769 LIICSGLVFVQIL 781


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 90  DIIPSNLQSASKSVR 46
           ++IPS LQS S S+R
Sbjct: 402 NLIPSALQSYSTSMR 416


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 90  DIIPSNLQSASKSVR 46
           ++IPS LQS S S+R
Sbjct: 402 NLIPSALQSYSTSMR 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,991
Number of Sequences: 438
Number of extensions: 818
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)