Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_G10
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    26   2.6  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    25   4.5  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   4.5  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   6.0  

>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
 Frame = -1

Query: 445 LHNLFLYPXXXXKLYH--------ASSGFQAPGRKIKSVANHTFLYWNQINKIYHINIFG 290
           LH+ ++YP     L+H        AS  F++    ++S+  H F ++  ++K+ ++ +F 
Sbjct: 140 LHHRYVYPRLHK-LHHKWIICTPYASHAFKSADGFLQSLPYHLFPFFFPLHKLTYLALFT 198

Query: 289 FMN 281
           F+N
Sbjct: 199 FVN 201


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 228 SMRSMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRKPGE 76
           SM + Q  NM  +++   V C     + ++  +    S+ AE W+  KPGE
Sbjct: 240 SMNTQQIYNM--SRAFNHVWCILNNKKVFLYDVHPLHSTSAEDWIHMKPGE 288


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 420 KKKKNFTMQVQDFKRQAEK*NQSRII 343
           K +KN T++V+  K++  K NQ+R++
Sbjct: 257 KPEKNLTVRVETKKQRNRKTNQTRLV 282


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 388 GFQAPGRKIKSVANHTFLYWNQINKIYHINIFGFMNLDVFLFN 260
           G  A G   ++    T  YW   N +  + I+   +L V +FN
Sbjct: 181 GDSAAGGTQQNFVRQTTKYWVHPNNVTELKIYILKHLPVLVFN 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,001
Number of Sequences: 5004
Number of extensions: 20064
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)