Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_G04
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 128 6e-31
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 55 1e-08
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 44 2e-05
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.69
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 29 0.91
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 2.8
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 4.9
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 26 4.9
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib... 25 8.5
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.5
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 128 bits (310), Expect = 6e-31
Identities = 74/202 (36%), Positives = 107/202 (52%), Gaps = 14/202 (6%)
Frame = +1
Query: 172 YRKPPKIAN--PYLQSLGAPHIDSFNYMLDDGL----------KFAIADLLPSEF-ELPS 312
++ PPK P LQ PH+DSFN + + GL K A + E L
Sbjct: 65 FKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKF 124
Query: 313 GEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVT 492
G K+ +DE AKP + ++ V P E R+R TYK L ++ + ++G
Sbjct: 125 GNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQ 184
Query: 493 IE-RSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLXRMLLVTRRN 669
E R +G +PIM++S CHL LSP ELI E ++E GGYF++ G E+L RML++ +RN
Sbjct: 185 SEMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRN 244
Query: 670 YPVAIKRSGWKMRGNLFSXYGV 735
+P AI R + RG +S YG+
Sbjct: 245 HPTAIIRPSFANRGTSYSQYGL 266
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 54.8 bits (126), Expect = 1e-08
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Frame = +1
Query: 205 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG 384
++ L H+DS+NY +D LK + ++ +K +D A D +
Sbjct: 60 VKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWFYLKY-LDIRVGAPVRTDADAIQ 118
Query: 385 VKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIKSKMCHLADL 558
+ P ECR R TY + + + G+ V R+ +G +P+M++S C L+
Sbjct: 119 AS---ISPHECRLRDLTYGANIYVDIEYT-RGKQVVRRRNVPIGRMPVMLRSNKCVLSGK 174
Query: 559 SPEELIEKNEHADEWGGYFVIKGHERL 639
+ E+ NE + GGYF++KG E++
Sbjct: 175 NEMEMAALNECPLDPGGYFIVKGTEKV 201
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 505 LGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 639
+G +PIM++S C L +S EL + NE + GGYF+I G E++
Sbjct: 152 IGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKV 196
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.1 bits (62), Expect = 0.69
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 121 PKKLAQNPSLAYTSHPDYR-KPPKIANPYLQSLGAPHIDSFNYMLDDGLK-FAIADLL 288
P L + +L + HP+ KP + P ++ A HID + D G F + +LL
Sbjct: 902 PNMLLKEANLYHLQHPEIPLKPDSLLGPEEENATASHIDGSSNASDSGYNAFVLKELL 959
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -2
Query: 191 IFGGFL*SGWLVYANDGFWASFFGFMLI*LR 99
I+ FL S LVYAN+GF GF L LR
Sbjct: 244 IYKNFLHSAKLVYANEGFRGFLDGFFLRVLR 274
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 286 LPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECR 420
LP F+L VK+ + +A A+ N+P V + + P + R
Sbjct: 140 LPKTFQLDESSVVKILLRKAKVAQENLPPSIVTELKKQLAPLDLR 184
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 267 LQAIVQHIIE*IYVRRSKTLKVRICYFW 184
L +I+ H+I + R+K LK + Y+W
Sbjct: 49 LPSILMHVIRFVMPSRNKELKKLLYYYW 76
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -2
Query: 389 LTPTVSIGTLGLANAASSIVTLTFSPL----GNSNSDGN 285
+TP S+G L N+ S + TLT SP+ N+++DG+
Sbjct: 31 MTPP-SMGALNANNSNSQLSTLTISPMTYLANNTSTDGS 68
>SPBC29A3.02c |his7||phosphoribosyl-AMP
cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
His7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 508 GYLPIMIKSKMCH-LADLSPEELIEKNEHAD 597
G L I++ +M + LAD+SP L+ K + D
Sbjct: 74 GALAILVNEEMLNELADISPNRLVLKTDTTD 104
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 466 LCIDGRSVTIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHAD 597
LC D I+R + ++I++ DLS EE ++NE+ D
Sbjct: 870 LCSDAVLSAIKRKTNEIDLLIQASG---TDLSTEEFFKRNENQD 910
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,459
Number of Sequences: 5004
Number of extensions: 62716
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -