Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_G04
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0003 + 16227213-16227220,16229085-16229282,16229565-162296... 47 1e-05
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411... 43 3e-04
10_08_0498 - 18342517-18342960,18343164-18343397,18343569-183437... 42 4e-04
09_04_0517 - 18253325-18253870,18254209-18254781,18254888-182551... 34 0.10
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419... 34 0.10
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469... 32 0.55
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 31 1.3
04_01_0052 - 548383-548494,548523-548592,549184-549364 30 1.7
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 29 3.9
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 29 5.1
04_01_0042 + 473912-474058,474208-474349,474442-476264 28 6.7
07_03_0996 - 23197758-23198705 28 8.9
>03_04_0003 +
16227213-16227220,16229085-16229282,16229565-16229657,
16230152-16230218,16230377-16230467,16230558-16230610,
16230784-16230848,16230905-16230968
Length = 212
Score = 47.2 bits (107), Expect = 1e-05
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Frame = +1
Query: 190 IANPYLQSLGAP---HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP 360
+ +P +SL AP +D F +L LK A P +P+ ++ ++ +
Sbjct: 19 LPSPTYRSLAAPVTKPVDKFA-LLPAFLKVAP----PPTCIIPASLLIRFDAIQSLYNSV 73
Query: 361 NVPMDTVGVK--SQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS----LGYLPI 522
V + +V V+ ++ + P CR TY + + + G+ ++R +GYLPI
Sbjct: 74 RVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTV-GKQYELKRKPNFIIGYLPI 132
Query: 523 MIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 639
M++S C L EL E + GGYF++KG E++
Sbjct: 133 MLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKV 171
>03_05_0487 +
24838620-24838967,24840526-24840747,24840819-24841109,
24841316-24841513,24841641-24841705,24841788-24841874,
24841988-24842108,24842200-24842244,24842321-24842458,
24842571-24842643,24842723-24842799,24842882-24842989,
24843108-24843224,24843524-24843679,24843780-24843881,
24844036-24844161,24844237-24844314,24844390-24844485,
24844592-24844707,24844781-24844850,24844930-24844983,
24845062-24845205,24845297-24845596,24845780-24846202,
24846316-24846429
Length = 1222
Score = 42.7 bits (96), Expect = 3e-04
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Frame = +1
Query: 325 KVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCI-----DGRSV 489
K++ + +KP M ++ + P R R TY L + V+ + D V
Sbjct: 120 KISFGQIYLSKPM--MTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEV 177
Query: 490 TIERS-----LGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 639
T +G +PIM++S C L S ++L E E + GGYF+I G E++
Sbjct: 178 TETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKV 232
>10_08_0498 -
18342517-18342960,18343164-18343397,18343569-18343781,
18344095-18344238,18344348-18344470,18345094-18345169,
18345252-18345355,18345745-18345819,18345942-18346106,
18346248-18346346,18346478-18346677,18346767-18346846,
18346922-18347049,18347936-18348048,18348580-18348672,
18349264-18349348,18350116-18350233,18350326-18350399,
18350485-18350537,18350624-18350804,18351219-18351264,
18351355-18351432,18351556-18351626,18351735-18351798,
18352064-18352071
Length = 1022
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 604 GGYFVIKGHERLXRMLLVTRRNYPVAIKRSGWKMRGNLFSXYGVL 738
GGYF+ G ERL R+L++ +RNYP+ + R + RG ++ V+
Sbjct: 2 GGYFICGGMERLVRILILQKRNYPMGLIRGSFVNRGAGYTDKAVI 46
>09_04_0517 -
18253325-18253870,18254209-18254781,18254888-18255100,
18255554-18255685,18255804-18255944,18256104-18256325
Length = 608
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +1
Query: 430 ATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGG 609
A Y E K+ LCI I+ Y + + ++ PEE+ K++ DEW
Sbjct: 52 AAYFSESKVHHNLCIPKEWALIKNL--YEEMRERIDTATMSGKIPEEMKLKHKGFDEWNS 109
Query: 610 YFVIKGHERLXRMLL 654
F +K H+ + ++L+
Sbjct: 110 DFTLKNHQPIVQILI 124
>08_01_0475 -
4185534-4186047,4187437-4187708,4188032-4188979,
4190096-4190387,4190486-4191357,4192298-4192354,
4192391-4192504,4192966-4193595
Length = 1232
Score = 34.3 bits (75), Expect = 0.10
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +1
Query: 325 KVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS 504
+V ++E F N +D +K + P R + TY ++K+ +T+ + + +
Sbjct: 165 RVELEEPVFWVDNCDLDVETLKLK---PKHARLQKMTYSSKMKVEMTVQVYSLHKSDKAK 221
Query: 505 LGYLP-IMIKSKMCHLADLSPEEL-IEKNEHADEWGGYFVIKGHERL 639
G P I K M ++ +L + ++E ++GGYF+IKG E++
Sbjct: 222 TGEDPYIQRKDIMKETKWVTIGKLPVMESECEYDFGGYFLIKGMEKV 268
>04_04_1323 +
32644956-32645096,32645488-32646126,32646701-32646907,
32647020-32647100,32647686-32648566,32648641-32648932,
32649657-32650673,32651334-32651605,32651992-32652493
Length = 1343
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 502 SLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHER 636
++G LP+M+ S +C L +L E + D GGYF+IKG E+
Sbjct: 291 NIGRLPVMVMSNLCWL-----HKLKESDCQFDS-GGYFLIKGMEK 329
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 30.7 bits (66), Expect = 1.3
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +1
Query: 121 PKKLAQNPSLAYTSHPDY--RKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPS 294
P KL+ P+LA + P KPPK A P + P + + ++A P
Sbjct: 121 PPKLSP-PNLAKATKPSRLAAKPPKKAAPGPELDPKPRKKAQRVSFQEDAAMSVA---PG 176
Query: 295 EFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTE 414
SGEKVKV+ D+AA P V + + K VV E
Sbjct: 177 -----SGEKVKVSTDDAAGHTPMVAVRALEKKVSVVASAE 211
>04_01_0052 - 548383-548494,548523-548592,549184-549364
Length = 120
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 199 PYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDT 378
P L S A DS++ ++D + A+ ++ ++ G +V + +DE+A A + M T
Sbjct: 48 PALDSFAAQEFDSYD-VIDAVVSGAVVVVVEDAVDVFEGREVSIYVDESAAACVPMLMKT 106
Query: 379 VG 384
+G
Sbjct: 107 IG 108
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 121 PKKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLD 255
P + A PS+ S DY KP + + L S+G P S N LD
Sbjct: 358 PVEPAVGPSIDLLSGDDYFKPEPVNSQALVSVGNPPAASANNTLD 402
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 280 DLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTEC 417
++L S+ ++P G+K +++ DE + D +KSQ L TEC
Sbjct: 331 EVLLSQKKMPDGQKEEISQDEYKRGISSWNFDMDDLKSQASLITEC 376
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 408 WEDHLRFNPYCIHRNIGFSECCFID--CHFDLFTTR 307
WEDHL + + + F F+ FDLF TR
Sbjct: 298 WEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTR 333
>07_03_0996 - 23197758-23198705
Length = 315
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 347 AASSIVTLTFSPLGNSNSDGNRSAIANFKPSSS 249
AA++ T T + NSNSDG SA SSS
Sbjct: 154 AAAAAATPTITTTSNSNSDGAGSACGGSSSSSS 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,746,425
Number of Sequences: 37544
Number of extensions: 387468
Number of successful extensions: 956
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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