Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_G04
(738 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase... 183 3e-46
AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p pro... 183 3e-46
AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA p... 183 3e-46
AY121645-1|AAM51972.1| 1146|Drosophila melanogaster LD14594p pro... 52 8e-07
AE013599-1387|AAF58590.1| 1137|Drosophila melanogaster CG8344-PA... 52 8e-07
X58826-1|CAA41631.1| 1135|Drosophila melanogaster RNA polymerase... 50 2e-06
BT003265-1|AAO25022.1| 1176|Drosophila melanogaster LD22387p pro... 50 3e-06
AE014297-1804|AAF55024.1| 1176|Drosophila melanogaster CG3180-PA... 50 3e-06
X05709-1|CAA29180.2| 1123|Drosophila melanogaster RNA polymerase... 49 6e-06
L09700-1|AAA28569.1| 399|Drosophila melanogaster GTP-binding pr... 31 1.2
AE014296-2779|AAF49429.2| 399|Drosophila melanogaster CG12232-P... 31 1.2
AY070546-1|AAL48017.1| 564|Drosophila melanogaster LD27030p pro... 31 2.2
AE013599-592|AAF59131.1| 564|Drosophila melanogaster CG2158-PA ... 31 2.2
>X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase 3,
second largestsubunit protein.
Length = 1129
Score = 183 bits (445), Expect = 3e-46
Identities = 80/194 (41%), Positives = 128/194 (65%), Gaps = 1/194 (0%)
Frame = +1
Query: 160 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTID 339
S P++++ PK + +L +LG PH+DSF+ ML GL + ++P+ + P+GEK+ + ++
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVE 76
Query: 340 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVT-IERSLGYL 516
AKP VP D + V+++ + PT+ RQ +Y G +R+ ++G T I LG +
Sbjct: 77 SIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEV 136
Query: 517 PIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLXRMLLVTRRNYPVAIKRSG 696
PIM++SK C+L +PEE+++ EH EWGG FVI+G+E++ RML++TRRN+P+ +KRS
Sbjct: 137 PIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSS 196
Query: 697 WKMRGNLFSXYGVL 738
WK RG FS G+L
Sbjct: 197 WKDRGQNFSDLGML 210
>AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p
protein.
Length = 1129
Score = 183 bits (445), Expect = 3e-46
Identities = 80/194 (41%), Positives = 128/194 (65%), Gaps = 1/194 (0%)
Frame = +1
Query: 160 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTID 339
S P++++ PK + +L +LG PH+DSF+ ML GL + ++P+ + P+GEK+ + ++
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVE 76
Query: 340 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVT-IERSLGYL 516
AKP VP D + V+++ + PT+ RQ +Y G +R+ ++G T I LG +
Sbjct: 77 SIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEV 136
Query: 517 PIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLXRMLLVTRRNYPVAIKRSG 696
PIM++SK C+L +PEE+++ EH EWGG FVI+G+E++ RML++TRRN+P+ +KRS
Sbjct: 137 PIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSS 196
Query: 697 WKMRGNLFSXYGVL 738
WK RG FS G+L
Sbjct: 197 WKDRGQNFSDLGML 210
>AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA
protein.
Length = 1129
Score = 183 bits (445), Expect = 3e-46
Identities = 80/194 (41%), Positives = 128/194 (65%), Gaps = 1/194 (0%)
Frame = +1
Query: 160 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTID 339
S P++++ PK + +L +LG PH+DSF+ ML GL + ++P+ + P+GEK+ + ++
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVE 76
Query: 340 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVT-IERSLGYL 516
AKP VP D + V+++ + PT+ RQ +Y G +R+ ++G T I LG +
Sbjct: 77 SIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEV 136
Query: 517 PIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLXRMLLVTRRNYPVAIKRSG 696
PIM++SK C+L +PEE+++ EH EWGG FVI+G+E++ RML++TRRN+P+ +KRS
Sbjct: 137 PIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSS 196
Query: 697 WKMRGNLFSXYGVL 738
WK RG FS G+L
Sbjct: 197 WKDRGQNFSDLGML 210
>AY121645-1|AAM51972.1| 1146|Drosophila melanogaster LD14594p
protein.
Length = 1146
Score = 52.0 bits (119), Expect = 8e-07
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
Frame = +1
Query: 187 KIANPYLQSLGA--PHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKV-KVTIDEAAFAK 357
K+ +LQ G HIDSFN+ ++ +K + +E + + + + K
Sbjct: 45 KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVK---ANELVTSGADPLFYLKYLDVRVGK 101
Query: 358 PNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSL-GYLPIMIKS 534
P++ D + ++ P ECR R TY + + + + + L G +P+M++
Sbjct: 102 PDID-DGFNI-TKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRC 159
Query: 535 KMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 639
C L S EL + NE + GGYFV++G E++
Sbjct: 160 SNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKV 194
>AE013599-1387|AAF58590.1| 1137|Drosophila melanogaster CG8344-PA
protein.
Length = 1137
Score = 52.0 bits (119), Expect = 8e-07
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
Frame = +1
Query: 187 KIANPYLQSLGA--PHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKV-KVTIDEAAFAK 357
K+ +LQ G HIDSFN+ ++ +K + +E + + + + K
Sbjct: 36 KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVK---ANELVTSGADPLFYLKYLDVRVGK 92
Query: 358 PNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSL-GYLPIMIKS 534
P++ D + ++ P ECR R TY + + + + + L G +P+M++
Sbjct: 93 PDID-DGFNI-TKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRC 150
Query: 535 KMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 639
C L S EL + NE + GGYFV++G E++
Sbjct: 151 SNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKV 185
>X58826-1|CAA41631.1| 1135|Drosophila melanogaster RNA polymerase
III second-largestsubunit protein.
Length = 1135
Score = 50.4 bits (115), Expect = 2e-06
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Frame = +1
Query: 187 KIANPYLQSLGA--PHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKV-KVTIDEAAFAK 357
K+ +LQ G HIDSFN+ ++ +K + +E + + + + K
Sbjct: 36 KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVK---ANELVTSGADPLFYLKYLDVRVGK 92
Query: 358 PNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSL-GYLPIMIKS 534
P++ D + ++ P ECR R TY + + + + + L G +P+M++S
Sbjct: 93 PDID-DGFNI-TKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRS 150
Query: 535 KMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 639
C L S EL + NE + GGYFV++G E++
Sbjct: 151 N-CALTGKSEFELSKLNECPLDPGGYFVVRGQEKV 184
>BT003265-1|AAO25022.1| 1176|Drosophila melanogaster LD22387p
protein.
Length = 1176
Score = 50.0 bits (114), Expect = 3e-06
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Frame = +1
Query: 118 NPKKLAQNPSLAYTSHPDYRKPPKIA-NPYLQSLGA--PHIDSFNYMLDDGLKFAIADL- 285
N ++L + + SH +++ I N Y G +DSF+ + ++ + D
Sbjct: 5 NEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 64
Query: 286 ---LPSEFELPSGE-----KVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYK 441
L +E + SGE + + ++ +KP + G S + +P E R R TY
Sbjct: 65 AIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPT-HWEKDGSPSPM-MPNEARLRNLTYS 122
Query: 442 GELKIRVTLC-----IDGRSVTIERS-LGYLPIMIKSKMCHLADLSPEELIEKNEHADEW 603
L + +T +D +++ +G +PIM++S C L+ L+ +L E NE +
Sbjct: 123 APLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDP 182
Query: 604 GGYFVIKGHERL 639
GGYF+I G E++
Sbjct: 183 GGYFIINGSEKV 194
>AE014297-1804|AAF55024.1| 1176|Drosophila melanogaster CG3180-PA
protein.
Length = 1176
Score = 50.0 bits (114), Expect = 3e-06
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Frame = +1
Query: 118 NPKKLAQNPSLAYTSHPDYRKPPKIA-NPYLQSLGA--PHIDSFNYMLDDGLKFAIADL- 285
N ++L + + SH +++ I N Y G +DSF+ + ++ + D
Sbjct: 5 NEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 64
Query: 286 ---LPSEFELPSGE-----KVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYK 441
L +E + SGE + + ++ +KP + G S + +P E R R TY
Sbjct: 65 AIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPT-HWEKDGSPSPM-MPNEARLRNLTYS 122
Query: 442 GELKIRVTLC-----IDGRSVTIERS-LGYLPIMIKSKMCHLADLSPEELIEKNEHADEW 603
L + +T +D +++ +G +PIM++S C L+ L+ +L E NE +
Sbjct: 123 APLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDP 182
Query: 604 GGYFVIKGHERL 639
GGYF+I G E++
Sbjct: 183 GGYFIINGSEKV 194
>X05709-1|CAA29180.2| 1123|Drosophila melanogaster RNA polymerase
protein.
Length = 1123
Score = 49.2 bits (112), Expect = 6e-06
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Frame = +1
Query: 400 VLPTECRQRAATYKGELKIRVTLC-----IDGRSVTIERS-LGYLPIMIKSKMCHLADLS 561
++P E R R TY L + +T +D +++ +G +PIM++S C L+ L+
Sbjct: 56 MMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLT 115
Query: 562 PEELIEKNEHADEWGGYFVIKGHERL 639
+L E NE + GGYF+I G E++
Sbjct: 116 DRDLTELNECPLDPGGYFIINGSEKV 141
>L09700-1|AAA28569.1| 399|Drosophila melanogaster GTP-binding
protein alpha-subunit protein.
Length = 399
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 202 YLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTV 381
Y +S P +DS Y LD+ ++ + A+ +PS ++ K+ I + F P +P
Sbjct: 153 YDRSNEFPLLDSAKYFLDNFVRISDAEYIPSTEDILHSRKITTGISQITFRVP-IPKSMG 211
Query: 382 GVKSQ 396
G + Q
Sbjct: 212 GGEQQ 216
>AE014296-2779|AAF49429.2| 399|Drosophila melanogaster CG12232-PA
protein.
Length = 399
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 202 YLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTV 381
Y +S P +DS Y LD+ ++ + A+ +PS ++ K+ I + F P +P
Sbjct: 153 YDRSNEFPLLDSAKYFLDNFVRISDAEYIPSTEDILHSRKITTGISQITFRVP-IPKSMG 211
Query: 382 GVKSQ 396
G + Q
Sbjct: 212 GGEQQ 216
>AY070546-1|AAL48017.1| 564|Drosophila melanogaster LD27030p
protein.
Length = 564
Score = 30.7 bits (66), Expect = 2.2
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = -2
Query: 446 SPLYVAALCR-HSVGRTT*DLTPTVSIGTLGLANA----ASSIVTLTFSPLGNSNSDGN- 285
SPL C S G TT TP VS G+ A +SSI +LT P G + SD
Sbjct: 290 SPLAKKPNCTITSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTP 349
Query: 284 RSAIANF 264
+S+I +F
Sbjct: 350 KSSIFSF 356
>AE013599-592|AAF59131.1| 564|Drosophila melanogaster CG2158-PA
protein.
Length = 564
Score = 30.7 bits (66), Expect = 2.2
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = -2
Query: 446 SPLYVAALCR-HSVGRTT*DLTPTVSIGTLGLANA----ASSIVTLTFSPLGNSNSDGN- 285
SPL C S G TT TP VS G+ A +SSI +LT P G + SD
Sbjct: 290 SPLAKKPNCTITSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTP 349
Query: 284 RSAIANF 264
+S+I +F
Sbjct: 350 KSSIFSF 356
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,104,464
Number of Sequences: 53049
Number of extensions: 674956
Number of successful extensions: 1914
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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