Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_G01
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    61   2e-10
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    33   0.051
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   4.4  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    26   5.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   7.7  

>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
 Frame = +2

Query: 350 SYFSRSDNFFNQYFVKIGWFWTLVITVPYVLLTSYTTCCGKRRMIATAHMVRLLIATVFW 529
           SYF  S N  N  FVK GWFWT        L+  Y     KR  I    + R ++AT++W
Sbjct: 51  SYFGNSKNLINLIFVKRGWFWT-------SLVYFYHAWDQKRNKIDFKFISRYIVATLWW 103

Query: 530 WGWTTLF---NVIENNY----GRCNSKSYDNKI-------TCL-KNGSFWNGFDISGHCF 664
              T  F    +I+  +    G C +   D+ +       TC   NGS+  G D+SGH F
Sbjct: 104 MFVTQWFIGPGLIDRTFALSGGSCKNFDGDSSVFIPLTASTCKGLNGSWSGGHDLSGHVF 163

Query: 665 ILIYSSLVLIEE 700
           +L +SSL ++ E
Sbjct: 164 LLTHSSLFMLSE 175


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 147 FIRVFLKFVRLVMFSF-KDLRYFYTIRFLHFH*AISLLHTHASWVQTLQT 1
           FIR  LKF  +V  S  K +R+ Y   F      ISLLH H    QT +T
Sbjct: 277 FIRTHLKFKTIVFLSSCKQVRFVYET-FRRMRPGISLLHLHGKQKQTTRT 325


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 726 RSHPFIALASSIKTKLEYIKIKQ*PDMSNPFQNDP-FFRHVILLSYDFE 583
           +S P +A +SS  ++L+ +     PD S+  +N P F   V  ++ DFE
Sbjct: 414 QSDPSVAASSSSSSQLDVVLKGSIPDTSSVRRNPPCFVNGVESINVDFE 462


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 817 FTTYIFKWVCTDCFVINTP*VS-FISDVIFNALPSIYCS 704
           F TY+ K    +  +++   V  F+SDV+ N +P ++ S
Sbjct: 264 FATYLLKTEIAETIILHPKDVPWFVSDVLVNDIPHLFNS 302


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 711 IALASSIKTKLEYIKI-KQ*PDMSNPFQNDPFFRHVILLSYDF 586
           IAL+ +++ K EYIKI    P  S P   D  + +V+L S  F
Sbjct: 508 IALSVAVRIKREYIKIASPSPGWSLPTNVDEDYDNVLLDSLKF 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,033
Number of Sequences: 5004
Number of extensions: 68459
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)