Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_F21
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0013 + 9393423-9393747,9396577-9396657,9397491-9397594,939... 47 3e-09
02_04_0627 + 24585712-24585845,24586415-24586503,24587039-245871... 38 0.007
04_04_0458 + 25370542-25370597,25371591-25371679,25372687-253727... 34 0.11
10_08_0721 - 20103490-20103867,20103892-20104284 33 0.25
01_05_0336 - 21111048-21111800 33 0.33
10_08_0706 + 20034534-20034860,20034988-20035368 31 0.77
01_07_0182 + 41838805-41839152,41839230-41839610 31 0.77
10_08_0720 - 20100406-20100798,20100917-20101249 31 1.0
10_08_0719 + 20097639-20097968,20098048-20098410 29 3.1
10_08_0707 + 20037301-20037633,20037862-20038248 29 3.1
10_08_0700 + 19969616-19969942,19970044-19970422,19970562-19970665 29 3.1
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 25 3.6
05_01_0143 - 944169-947273 29 4.1
10_08_0708 + 20040482-20040808,20040906-20041280 29 5.4
10_08_0692 + 19918746-19919072,19919419-19919781,19919841-199199... 28 7.2
>04_03_0013 +
9393423-9393747,9396577-9396657,9397491-9397594,
9397777-9397832,9398713-9398807,9400900-9401067,
9401181-9401341
Length = 329
Score = 46.8 bits (106), Expect(2) = 3e-09
Identities = 20/39 (51%), Positives = 30/39 (76%)
Frame = +2
Query: 515 RAYLDARGISYEVVEVDAVLRQAIKWSGYKKVPIVLAKV 631
+A+LD I Y+VVEV+ + ++ IKWS YKKVPI++ +V
Sbjct: 135 QAFLDYHDIPYKVVEVNPLSKKEIKWSEYKKVPILMQRV 173
Score = 32.3 bits (70), Expect(2) = 3e-09
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 467 SLVLFQYRTCPFCCKVRAYL 526
++VL+QY+ CPFC KVR L
Sbjct: 92 NVVLYQYQACPFCNKVRGKL 111
>02_04_0627 +
24585712-24585845,24586415-24586503,24587039-24587137,
24587326-24587405
Length = 133
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +2
Query: 470 LVLFQYRTCPFCCKVRAYLDARGISYEVVEVD-----AVLRQAI-KWSGYKKVPIVLAK 628
+V+F CPFC +V+ L SY+ VE+D + L+ A+ W+G + VP V K
Sbjct: 41 VVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIK 99
>04_04_0458 +
25370542-25370597,25371591-25371679,25372687-25372785,
25372960-25373054
Length = 112
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = +2
Query: 470 LVLFQYRTCPFCCKVRAYLDARGISYEVVEVD-----AVLRQAI-KWSGYKKVPIV 619
+V++ CPFC +V+ + G +++ +E+D + L+ A+ +W+G + VP V
Sbjct: 15 VVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNV 70
>10_08_0721 - 20103490-20103867,20103892-20104284
Length = 256
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +2
Query: 497 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 622
PF +VR L+ +G+SYE VE D + + + +KKVP+++
Sbjct: 17 PFAIRVRIALNIKGVSYEYVEEDIFNKSELLLTSNPVHKKVPVLI 61
>01_05_0336 - 21111048-21111800
Length = 250
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +2
Query: 497 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 622
PF +VR L+ +G+SYE VEVD + + + + KVP++L
Sbjct: 24 PFLVRVRLALNLKGLSYEYVEVDLAGKSDLLLAANPVHAKVPVLL 68
>10_08_0706 + 20034534-20034860,20034988-20035368
Length = 235
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 491 TCPFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 622
T PF +V+ L +G+SYE E D + + S +KKVP+++
Sbjct: 15 TSPFALRVKLALSFKGLSYEYAEEDLSNKSELLLSSNPVHKKVPVLI 61
>01_07_0182 + 41838805-41839152,41839230-41839610
Length = 242
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +2
Query: 497 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVLAKVDGGYQQLLDSTA 667
PF +V A L +G++YE++ D + + + +KKVP++L DGG + + +S
Sbjct: 14 PFVHRVEAALQLKGVAYELIHEDLENKSNLLLASNPVHKKVPVLL---DGG-RAICESLV 69
Query: 668 IISILE 685
I+ ++
Sbjct: 70 IVEYVD 75
>10_08_0720 - 20100406-20100798,20100917-20101249
Length = 241
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 446 DSDTSNLSLVLFQYRTCPFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPI 616
D D L LV+ PF +V L +G+SYE +E D + + S +KK+P+
Sbjct: 5 DDDVKVLGLVM-----SPFAIRVCIALKLKGVSYEYIEEDLANKSELLLSSNPVHKKIPV 59
Query: 617 VL 622
++
Sbjct: 60 LI 61
>10_08_0719 + 20097639-20097968,20098048-20098410
Length = 230
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 458 SNLSLVLFQYRTCPFCCKVRAYLDARGISYEVVEVDAVLRQ---AIKWSGYKKVPIVL 622
+N L L PF +VR L +G+SYE VE D + + +KKVP+++
Sbjct: 5 NNHELKLLGTWPSPFVVRVRLALGLKGLSYEYVEQDIRDKSELLVVSNPVHKKVPVLI 62
>10_08_0707 + 20037301-20037633,20037862-20038248
Length = 239
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 497 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 622
PF +V L +G+SYE V+ D V + + + +KK+P+++
Sbjct: 17 PFVTRVELALGLKGLSYEYVKQDLVNKSELLLASNPVHKKIPVLI 61
>10_08_0700 + 19969616-19969942,19970044-19970422,19970562-19970665
Length = 269
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 497 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVLAK 628
PF + + L +G+SY+ VE D + + S +KKVP+++ K
Sbjct: 17 PFALRAKLALSFKGLSYDYVEEDFKNKSDVLLSSNPVHKKVPVLIHK 63
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 24.6 bits (51), Expect(2) = 3.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 599 YKKVPIVLAKVDGGYQQLLDSTAIISILETYLLDK 703
Y+ +P + GGY +L IISI+ L K
Sbjct: 598 YRTIPFAWNLITGGYVELTIPGVIISIVGLLLFGK 632
Score = 23.0 bits (47), Expect(2) = 3.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 467 SLVLFQYRTCPF 502
+L+LF YRT PF
Sbjct: 592 NLILFSYRTIPF 603
>05_01_0143 - 944169-947273
Length = 1034
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 4 ITLRWLVLPAKKKLMGLFSC*NGLIFNQASTLVF 105
+ LR + PAKKK L +C N + Q S +VF
Sbjct: 998 VPLRLFLFPAKKKKPSLLACVNPALQKQHSDMVF 1031
>10_08_0708 + 20040482-20040808,20040906-20041280
Length = 233
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 497 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 622
PF + + L +G+SYE VE D + + + +KKVP+++
Sbjct: 17 PFALRAKLALSFKGLSYEYVEEDLKNKSELLLTSNPVHKKVPVLI 61
>10_08_0692 +
19918746-19919072,19919419-19919781,19919841-19919977,
19920298-19920304
Length = 277
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 497 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 622
PF + + L +G+SY+ VE D + + S +KKVP+++
Sbjct: 17 PFALRAKLALSFKGLSYDYVEEDFKNKSELLLSSNPVHKKVPVLI 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,338
Number of Sequences: 37544
Number of extensions: 316398
Number of successful extensions: 672
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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