Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_F17
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 28 0.88
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.5
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 25 6.2
SPAC167.04 |pam17||presequence translocase-associated motor subu... 25 6.2
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 25 8.2
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 8.2
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe... 25 8.2
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 8.2
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 8.2
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.88
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 353 VLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVLTSS 475
+L T + N+ PTS S+ SSKS+ T T+ T T++
Sbjct: 587 LLRTHSLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATTT 627
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 278 NT*SSSVGTGMLRQS*CETFPDGRSVLTTENASTNLFPPTSWSNQSSKSTMH--TVTSKS 451
+T SSS + + + S LT+ ++S++ P S S+ SS + H + +SKS
Sbjct: 357 STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSS--RPASSSSHSSSLSSHKSSSSSKS 414
Query: 452 GTNVLTSSFFH 484
+ ++S+F+H
Sbjct: 415 SSAPVSSAFYH 425
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +2
Query: 287 SSSVGTGMLRQS*CETFPDGRSVLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVL 466
+SSV T + + S + + S++ P+S S+ S S+ ++S S ++ L
Sbjct: 7 TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66
Query: 467 TSSFF 481
+SS F
Sbjct: 67 SSSSF 71
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = +1
Query: 352 GTYYGERVYKLIPPDQLVEPIFQEYYAHSDIKEWNKRAN 468
G+Y E+ Y+ PP++ + + ++ + SD+++ +KR +
Sbjct: 122 GSYNEEKYYQ--PPEKFEQSLNEKCFHRSDVQKLSKRCD 158
>SPAC167.04 |pam17||presequence translocase-associated motor subunit
Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 259 LAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKL 384
+A R++E+ + L +NR P + YYGE++Y L
Sbjct: 135 IAAREQEFYRHLVKNRVTPQMESYSNP---IPDYYGEKIYSL 173
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 121 FSGYTMFAGFIGMTIGSIYLYNITY 195
F+GY + GF+G IG + TY
Sbjct: 136 FNGYAILFGFVGAWIGFFLFASDTY 160
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 217 IEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDV 336
+ +RS + + + AE+D EY QL+ R+A + +D+
Sbjct: 178 LNLRS-HLQVQEQVYAEKDHEYSLQLQSYREAAEKAKQDI 216
>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 96 KWNWFVAPRRGQILFFSHLKSFSHLWLDF 10
K NW+V P G F + L S W+ F
Sbjct: 44 KLNWYVLPEMGFQAFSALLLLLSGAWITF 72
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 370 RVYKLIP-PDQLVEPIFQEYYAHSDIKEW 453
R ++P P+++V + YY HS EW
Sbjct: 1277 RFLAMMPHPERVVLKVANSYYPHSKASEW 1305
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 8.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 169 SIYLYNITYKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVP 339
S+Y +IT KR+L ++ +A +Y L + K NR E ++ DVP
Sbjct: 182 SLYRGDITAKRLLSGQVAQPAAADPLYRVLNS-------KIFNLNRGDEGDIYNDVP 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,392
Number of Sequences: 5004
Number of extensions: 50517
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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