Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_F17
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical ...    96   2e-20
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83239-2|CAB05802.1|  182|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81496-1|CAB04067.1|  226|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   7.5  

>AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical
           protein C34B2.8 protein.
          Length = 171

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 51/129 (39%), Positives = 72/129 (55%)
 Frame = +1

Query: 52  KQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYKRILKDEIEMRS 231
           +QD+PP GGY+   F R   K  +S  T+ A   G T   +Y      K+ + ++ E   
Sbjct: 8   RQDMPPKGGYRAFNFHRTFPKLVWSPGTVVAAIFGATAYGVYAALEGKKKDITEKFEDVD 67

Query: 232 AKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKLIPPDQLVEP 411
              A+ P L AERDR +LK L +NR  E E+M+DVPGW+ GT+YGE VY  +  D+  +P
Sbjct: 68  INNAMEPFLTAERDRYWLKLLAKNRALEEEIMKDVPGWKTGTWYGEPVYFTL-GDKWWDP 126

Query: 412 IFQEYYAHS 438
              E + HS
Sbjct: 127 TATEVFVHS 135


>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
           protein F40F12.5 protein.
          Length = 1144

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = +1

Query: 259 LAERDREYLKQLRRNRDAE----AELMRDVPGWEVGTYYG---ERVYKLIPPDQLVEPIF 417
           +++  R+   +L RNR++     A L R V G    + YG   E     IPP  +V  + 
Sbjct: 97  VSDYSRDRTTKLDRNRNSPELIVALLQRKVQGIRFSSNYGREEEPCVIEIPPGTMVREMA 156

Query: 418 QEYYAHSDIKEW 453
            + +  S++KEW
Sbjct: 157 DDDWKMSELKEW 168


>Z83239-2|CAB05802.1|  182|Caenorhabditis elegans Hypothetical
           protein T09F5.2 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 115 SYFSGYTMFAGFIGMTIGSIYLYNITYKR---ILKDEIEMRSAKMAI 246
           S+F G+T+ A F+ +  G  ++Y   Y R   I+  E+E  S K ++
Sbjct: 32  SFFIGFTVSAVFVLIAFGVSFIYFAQYDRTVKIIPKELEKSSRKSSL 78


>U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical
           protein D2096.3 protein.
          Length = 936

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 408 FDQLVGGNKFVDAFSVVSTDLPSGNV 331
           +D  +GG +F D F  ++T LPS N+
Sbjct: 165 WDTSIGGMQFADKFIQIATYLPSKNI 190


>Z81496-1|CAB04067.1|  226|Caenorhabditis elegans Hypothetical
           protein F09C6.1 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 165 NCHSNEPRKHSISAEIRF-SGDPFKW-NWFVAPRRGQILF 52
           +CH    R +    ++   +G P  W NW+V  R+G+++F
Sbjct: 112 SCHGTYLRAYDKGLKVDMKTGAPGTWENWWVEDRKGKVVF 151


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 59  ICPLRGATNQFHLKGSPLN 115
           +C +RG  N+  LKG+PLN
Sbjct: 599 VCDMRGRFNRILLKGTPLN 617


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,311,434
Number of Sequences: 27780
Number of extensions: 280468
Number of successful extensions: 915
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)