Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_F15
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    30   0.18 
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   2.2  
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    26   2.9  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.8  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   6.6  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   8.7  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   8.7  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.7  

>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 182 EMLLHPELLSNEQLTHIIEQRHLRI--DGIEKM-LRDDLLDLFHQYCVPYGQ 328
           E  L P + S   L  IIE  H++   D I+ + ++D+L+D FH  CV   Q
Sbjct: 71  EAALRPAVGSVHDLVRIIETDHVQAARDFIQDVGIQDELIDAFHADCVELEQ 122


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +3

Query: 78  ILCVGAIKLQIISVSMLHVIKSSSLTSEKQWLFLTK 185
           +  + +  LQII ++ L ++KS +L  ++ + F+++
Sbjct: 251 VFAISSSSLQIIDINTLSLVKSINLKDDESFSFISR 286


>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 182 EMLLHPELLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRK 334
           E +L+  LLS  +L  II     R    ++   D L++  ++YC    Q++
Sbjct: 5   EQILNDYLLSQGRLQSIISLEQWRQLFPQRYREDPLIERLYEYCTQQRQKR 55


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 218 QLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVP 319
           +L  I E+  L   GI K+L+DDLL +F+ +  P
Sbjct: 254 RLLKITEREFLLYTGILKILKDDLL-VFYTFIPP 286


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 383 SPEPSRSLNKIKETXXTTVERIKPPPDLLSGSHETDKLXNVP 508
           +PE  RSLN    +   T   +  PP   S S   D   +VP
Sbjct: 607 TPEKDRSLNVTPSSSTPTPASVLAPPSSASLSSSKDANRSVP 648


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 215 EQLTHIIEQRHLRIDGIEKMLRDDLLDLFH 304
           EQL +I   R++RI G+E +L  D+ DL H
Sbjct: 199 EQLVYIEALRNMRIMGLE-ILNLDVQDLKH 227


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 374 RHISPEPSRSLNKIKETXXTTVERIK 451
           R +SP+ S S   +KE   TT+++I+
Sbjct: 814 RLLSPQKSDSFGSLKEGGTTTIKKIE 839


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 323 GQRKYRDSGRGKILNRTRHISP-EPSRSLNK 412
           G R  R  GRG  +NR +H  P +   S+NK
Sbjct: 643 GMRTNRGRGRGGRMNRMQHPRPLQSGGSVNK 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,534
Number of Sequences: 5004
Number of extensions: 36972
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)