Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_F14
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    29   0.52 
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   3.7  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    26   4.8  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   8.5  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 51  VVKIS*NVGVYWFCLLYYCXLFIYHAIKNKIRDLFXNSSSCC 176
           V+ +S  VGV+  C+  +   F+ H I     D+      CC
Sbjct: 66  VIYVSSKVGVFTLCIASFLPSFVLHVISPINWDVLRRKPGCC 107


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 283 DEAVNELRRRCCDYNALGF-DCEWVTD 360
           D+A NE  R CCD     F +C W  D
Sbjct: 344 DDAQNEKVRLCCDAAGTNFANCYWNVD 370


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 433 SSMETIPNSLKDLLEDEKIYK 495
           S++E++P SLK L++DE + K
Sbjct: 327 SNIESLPASLKQLIKDEYLQK 347


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 238 FSYINIKIVTNERNCDEAVNELRRRCCDYNALGFDC 345
           F +++ K+ T+   C E +  L +R C     GF C
Sbjct: 400 FKHVSFKLPTSCSYCREIIWGLSKRGCVCKNCGFKC 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,104
Number of Sequences: 5004
Number of extensions: 43443
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)