Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_F14
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0636 + 30761733-30762359 55 5e-08
01_02_0087 - 10989050-10989655 53 2e-07
01_06_0637 + 30763657-30763858,30765600-30766261 52 5e-07
01_06_0144 - 26961473-26962072 50 1e-06
04_01_0629 - 8279609-8280244 48 8e-06
01_06_0141 - 26905855-26906928 46 2e-05
01_02_0086 - 10979236-10979396,10980288-10980798,10984446-109849... 38 0.005
11_01_0751 - 6320726-6321108,6321138-6321278,6321404-6321574,632... 32 0.31
02_02_0245 - 8240398-8240707,8241411-8241433 32 0.40
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611... 30 1.2
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 29 2.2
01_01_0233 - 1957104-1958041,1958213-1958467,1959420-1960136,196... 28 5.0
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551... 27 8.7
>01_06_0636 + 30761733-30762359
Length = 208
Score = 54.8 bits (126), Expect = 5e-08
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Frame = +1
Query: 244 YINIKIVTNERNCDEAVNEL---RRRCCDYNALGFDCEW--VTDHGKRNPVALVQLSSSD 408
YI+ + + + D+ ++E+ RR +Y +G D EW T + PVA++Q+
Sbjct: 22 YIHTTVTYSGDDVDDWLDEILRIHRRRLNYLVVGLDVEWRPATYYHGPGPVAVLQICVGR 81
Query: 409 GLCCLFRLSSMETIPNSLKDLLEDEKIYKVGVXASDDGKYLFQDYSVKLKSTLDVRYL 582
C +F++ + +P+SL D L D + VGV DD L + +++++ +D+RYL
Sbjct: 82 R-CLIFQILHADYVPDSLFDFLADGRFTFVGVGIHDDVAKLRSHHGLEVENVVDLRYL 138
>01_02_0087 - 10989050-10989655
Length = 201
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +1
Query: 331 LGFDCEWVTDH--GKRNPVALVQLSSSDGLCCLFRLSSMETIPNSLKDLLEDEKIYKVGV 504
+G DCEW +H K + VA++QL + + C + +L +P ++ DLL D + VG+
Sbjct: 47 VGLDCEWKPNHVSWKTSKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLVGI 106
Query: 505 XASDDGKYLFQDYSVKLKSTLDV 573
+D L DY V + +D+
Sbjct: 107 GVGEDAAKLEADYGVWCAAPVDL 129
>01_06_0637 + 30763657-30763858,30765600-30766261
Length = 287
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = +1
Query: 283 DEAVNELRRRCCDYNALGFDCEWVTDHG--KRNPVALVQLSSSDGLCCLFRLSSMETIPN 456
DE V RR D+ +G D EW G PVA++Q+ C +F++ + +P+
Sbjct: 118 DEIVRIHHRRL-DHLIVGLDVEWNPASGFCALGPVAVLQICVGRR-CLVFQIIHADYVPD 175
Query: 457 SLKDLLEDEKIYKVGVXASDDGKYLFQDYSVKLKSTLDVRYL 582
L D L D + VGV DD L + Y +++++ +D+RYL
Sbjct: 176 QLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENAVDLRYL 217
>01_06_0144 - 26961473-26962072
Length = 199
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 331 LGFDCEWVTDHG-KRNPVALVQLSSSDGLCCLFRLSSMETIPNSLKDLLEDEKIYKVGVX 507
+G D EW +G +NPVAL+QL D C +F+L + +P SL+ L VGV
Sbjct: 48 VGLDVEWRPSYGPAQNPVALLQL-CVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVG 106
Query: 508 ASDDGKYLFQDYSVKLKSTLDVRYL 582
D + L D+ + + +T D+R L
Sbjct: 107 VDKDAERLSDDHGLTVANTADLRPL 131
>04_01_0629 - 8279609-8280244
Length = 211
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/94 (29%), Positives = 45/94 (47%)
Frame = +1
Query: 301 LRRRCCDYNALGFDCEWVTDHGKRNPVALVQLSSSDGLCCLFRLSSMETIPNSLKDLLED 480
+ R C +G D EW PVA++QL D C +F++ + +P++L L D
Sbjct: 46 IHRSCGHPLVVGLDVEWRPAAPVPGPVAVLQLCV-DRRCLVFQILHADYVPDALSRFLAD 104
Query: 481 EKIYKVGVXASDDGKYLFQDYSVKLKSTLDVRYL 582
+ VGV DD L Y +++ +D+R L
Sbjct: 105 PRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRAL 138
>01_06_0141 - 26905855-26906928
Length = 357
Score = 46.4 bits (105), Expect = 2e-05
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Frame = +1
Query: 247 INIKIVTNERNCDEAVNEL-RRRCCDYNALGFDCEWVTDH---GKR-NPVALVQLSSSDG 411
I+ I ++ + +NE+ R R +G D EW TDH GK VA++QL
Sbjct: 165 IHTTITSSHSLAAQFINEIARERPQGGLIVGIDTEWRTDHLPNGKTCYKVAVLQLCVGRR 224
Query: 412 LCCLFRL-SSMETIPNSLKDLLEDEKIYKVGVXASDDGKYLFQDYSVKLKSTLDVRY 579
C LF++ + +P+ L + L D + VGV ++D + L D ++++ +D+RY
Sbjct: 225 -CLLFQIYQAGNMVPHELAEFLADPSVRFVGVAVNNDMQRLANDCNLRVACAVDLRY 280
>01_02_0086 -
10979236-10979396,10980288-10980798,10984446-10984977,
10984983-10985002
Length = 407
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 331 LGFDCEWVT-DH---GKRNPVALVQLSSSDG--LCCLFRLSSMETIPNSLKDLLEDEKIY 492
+G DCEW DH VA++QL + D + L ++ +P + DLL D +
Sbjct: 47 VGLDCEWKPCDHLWPAVAPTVAILQLCAGDSCLILQLLHVAGARRVPPLVGDLLADPSVR 106
Query: 493 KVGVXASDDGKYLFQDYSVKLKSTLDV 573
VG+ ++ L Y V+ + +D+
Sbjct: 107 LVGIGIGENAAKLADGYGVRCAAPVDL 133
>11_01_0751 -
6320726-6321108,6321138-6321278,6321404-6321574,
6321912-6322191
Length = 324
Score = 32.3 bits (70), Expect = 0.31
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 328 ALGFDCEWVTDHG----KRNPVALVQLSSSDGLCCLFRL-SSMETIPNSLKDLLEDEKIY 492
AL D EW DH K V ++QL + C +F+L + +P L + L D +
Sbjct: 197 ALSIDTEWREDHEPDDKKCYKVVVLQLCVNRR-CLVFQLYQASNEVPRELAEFLADAGVR 255
Query: 493 KVGVXASDDGKYLFQDYSVKLKSTLDVR 576
VGV + L + ++++ +D+R
Sbjct: 256 FVGVGVDGGVRRLANECNLRVACAVDLR 283
>02_02_0245 - 8240398-8240707,8241411-8241433
Length = 110
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 412 LCCLFRLSSMETIPNSLKDLLEDEKIYKVGVXASDDGKYLFQDYSVKLKSTLDVRYL 582
+C +F + IP SL+ L VGV D + L D+S+ +T D+R L
Sbjct: 8 VCLIFPFLHADYIPGSLRRFLAGAADCFVGVSVDKDAERLSDDHSLPAGNTADLRTL 64
>12_02_0117 -
13860418-13860524,13860612-13860810,13860969-13861148,
13861230-13861375,13862185-13862323,13863076-13863153,
13863654-13863722,13863806-13863925,13864792-13864875,
13864961-13865032,13865204-13865345,13866016-13866023
Length = 447
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 274 RNCDEAVNELRRRCCDYNALGFD-CEWVTDHGKRNPVALVQLSSSDGLC 417
R +E VNE+RR+ C Y +V D G +P+ +LS LC
Sbjct: 358 RKVNEVVNEIRRQRCSYLRYSLQVLNYVDDIGTFSPLTFSKLSCRLRLC 406
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +1
Query: 253 IKIVTNERNCDEAVNELRRRCCDYN-ALGFDCEWVTDHGK--RNPVALVQLSSSDGLCCL 423
I + TN+++CD+A+ +L++ C L D W D K + LVQ + +
Sbjct: 247 ITMTTNDKDCDKALQKLKQEVCGKRYLLVLDDVWNRDADKWAKLKTCLVQGGAGSAILTT 306
Query: 424 FRLSSMETIPNSLK 465
RL+ + S++
Sbjct: 307 TRLTEVARTMGSVQ 320
>01_01_0233 -
1957104-1958041,1958213-1958467,1959420-1960136,
1960728-1961403
Length = 861
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 429 PEQATQAIR***LYQCNWISFSVICH 352
PEQAT++ +C W+ F VICH
Sbjct: 51 PEQATES-------KCGWLGFQVICH 69
>12_02_1088 -
25954506-25954652,25954769-25954918,25955011-25955116,
25955247-25955569,25955656-25955790,25956310-25956444,
25956445-25956525,25956619-25956807,25956935-25957127,
25957244-25957350,25957457-25957531,25957619-25957774,
25957968-25958051,25958152-25958265,25958345-25958440,
25958543-25958633,25958721-25958836,25958934-25959093,
25960390-25960634
Length = 900
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 334 GFDCEWVTDHGKRNPVALVQLSSSDGLCCLFRLSSMETIPNSL-KDLLE 477
G D W +P+AL+ S LCC + + M T N+ D+LE
Sbjct: 771 GADIRWSDTEDADSPLALLWKHSDAILCCSLKPAPMFTFANNAGLDILE 819
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,461,487
Number of Sequences: 37544
Number of extensions: 242504
Number of successful extensions: 526
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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