Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_F14
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 216 ISRRCECFFVYKYQNCH 266
           ++RRC C ++YK    H
Sbjct: 322 VARRCLCEYLYKQLELH 338


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 293 TASSQFLSLVTILIFIYEKAFTASRNLLFRFQNK 192
           +ASS FLSL+   + +Y   F  SR  L     K
Sbjct: 10  SASSVFLSLLIPALILYFIYFRISRRHLLELAEK 43


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 499 QLYRFFHLLRDPLKN 455
           QLY  F +L DP KN
Sbjct: 442 QLYTAFDVLTDPKKN 456


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 400 MIIVPVQLDFFFRDLS 353
           +II+PV + FF  DLS
Sbjct: 103 LIILPVAISFFNDDLS 118


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 400 MIIVPVQLDFFFRDLS 353
           +II+PV + FF  DLS
Sbjct: 103 LIILPVAISFFNDDLS 118


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 400 MIIVPVQLDFFFRDLS 353
           +II+PV + FF  DLS
Sbjct: 103 LIILPVAISFFNDDLS 118


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 499 QLYRFFHLLRDPLKN 455
           QLY  F +L DP KN
Sbjct: 442 QLYTAFDVLTDPKKN 456


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 367 KRNPVALVQLSSSDGLCCLFRLSSMETIPNSLKDLLEDEKI 489
           ++NP A  +      +  L   SS  T+P + + L E+ KI
Sbjct: 340 RQNPAAFFRGMMQAWMTALGTASSAATLPITFRCLEENNKI 380


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 87  TNKHLHSTRFLLHNTTSNKYKQSN 16
           +NK +H+     +N  +N Y  +N
Sbjct: 319 SNKTIHNNNNYKYNYNNNNYNNNN 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,796
Number of Sequences: 438
Number of extensions: 2774
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)